Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A26F-01A | TCGA-A7-A26F | RAP1GAP|CELA3B | RAP1GAP | CELA3B | 1 | 1 | -1 | 1 | 2 | 2 | 2 | 0.12 | 21943799 | 22304862 | tier4 | Out-of-frame | 14276 | NA | 0 |
| PRAD | TCGA-YL-A8SC-01A | TCGA-YL-A8SC | KIAA0317|CELA3B | KIAA0317 | CELA3B | 14 | 1 | -1 | 1 | 4 | 1 | 1 | 0.67 | 75139534 | 22304862 | tier3 | Out-of-frame | 8771 | NA | 0.33526 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | ARFGEF2|FAM19A5 | ARFGEF2 | FAM19A5 | 20 | 22 | 1 | 1 | 47 | 14 | 12 | 0.83 | 47538547 | 49042409 | tier1 | In-frame | 1199 | non-validated | 0.36103 |
| LUAD | TCGA-44-7659-01A | TCGA-44-7659 | TNRC6B|FAM19A5 | TNRC6B | FAM19A5 | 22 | 22 | 1 | 1 | 4 | 6 | 2 | 0.04 | 40552186 | 49145651 | tier1 | Out-of-frame | 18392 | NA | 0 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | ZNRF3|FAM19A5 | ZNRF3 | FAM19A5 | 22 | 22 | 1 | 1 | 8 | 3 | 3 | 0.053 | 29383189 | 49042409 | Out-of-frame | 20702 | non-validated | 0 | |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 5 | 6 | 4 | 0.008 | 124774419 | 124839530 | tier1 | In-frame | 7688 | NA | 0.34984 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 6 | 4 | 4 | 0.008 | 124696703 | 124811042 | tier1 | Out-of-frame | 7686 | NA | 0.34984 |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | SCAMP2|SLC12A8 | SCAMP2 | SLC12A8 | 15 | 3 | -1 | -1 | 71 | 31 | 28 | 1.1 | 75165540 | 124811042 | tier1 | Out-of-frame | 15374 | validated | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.008 | 124774419 | 124854626 | tier3 | In-frame | 7685 | NA | 0.34984 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.008 | 124774419 | 124829179 | tier1 | Out-of-frame | 7687 | NA | 0.34984 |
| BRCA | TCGA-A7-A0DA-01A | TCGA-A7-A0DA | XRCC6|GPX5 | XRCC6 | GPX5 | 22 | 6 | 1 | 1 | 26 | 38 | 36 | 0.51 | 42018090 | 28500098 | tier1 | Out-of-frame | 19986 | NA | 0 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | CALD1|AKR1B15 | CALD1 | AKR1B15 | 7 | 7 | 1 | 1 | 4 | 1 | 1 | 0.26 | 134528722 | 134249350 | tier3 | 5UTR-5UTR | 2900 | NA | 0.35846 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 44 | 34 | 33 | 1.7 | 48130263 | 48351436 | tier1 | 5UTR-CDS | 9897 | NA | 0.36249 |
| CESC | TCGA-C5-A1M6-01A | TCGA-C5-A1M6 | NME6|SPINK8 | NME6 | SPINK8 | 3 | 3 | -1 | -1 | 295 | 183 | 150 | 100 | 48338217 | 48351436 | tier1 | Out-of-frame | 11613 | NA | 0.33958 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 8 | 3 | 3 | 1.7 | 48040128 | 48351436 | tier1 | Out-of-frame | 9898 | NA | 0.36249 |
| LUAD | TCGA-99-8028-01A | TCGA-99-8028 | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 4 | 2 | 2 | 1.7 | 48130263 | 48351436 | tier1 | 5UTR-CDS | 9899 | NA | 0.36249 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 30 | 16 | 12 | 1.7 | 47956307 | 48351436 | tier1 | Out-of-frame | 9900 | NA | 0.36249 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 1.7 | 48019355 | 48351436 | tier2 | Out-of-frame | 9901 | NA | 0.36249 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 4 | 3 | 2 | 1.7 | 48019355 | 48351436 | tier1 | Out-of-frame | 9902 | NA | 0.36249 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | DIP2A|PRH1 | DIP2A | PRH1 | 21 | 12 | 1 | -1 | 7 | 10 | 9 | 0.15 | 47910632 | 11033655 | tier1 | CDS-3UTR | 4829 | validated | 0.36124 |
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