Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | SCYL3|KIFAP3 | SCYL3 | KIFAP3 | 1 | 1 | -1 | -1 | 4 | 3 | 3 | 1.8 | 169842837 | 169923251 | tier1 | Out-of-frame | 15453 | NA | 0 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | SCYL3|PDZRN4 | SCYL3 | PDZRN4 | 1 | 12 | -1 | 1 | 14 | 4 | 3 | 0.12 | 169831754 | 41900258 | tier1 | In-frame | 15455 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | SCYL3|TSPAN8 | SCYL3 | TSPAN8 | 1 | 12 | -1 | -1 | 12 | 7 | 5 | 0.19 | 169857817 | 71551567 | tier1 | CDS-5UTR | 15456 | NA | 0 |
| SKCM | TCGA-EE-A20F-06A | TCGA-EE-A20F | SCYL3|CLPTM1L | SCYL3 | CLPTM1L | 1 | 5 | -1 | -1 | 7 | 7 | 6 | 1.1 | 169857817 | 1325931 | tier1 | In-frame | 15452 | NA | 0 |
| STAD | TCGA-BR-8297-01A | TCGA-BR-8297 | SCYL3|KIFAP3 | SCYL3 | KIFAP3 | 1 | 1 | -1 | -1 | 5 | 25 | 22 | 1.8 | 169857817 | 169985765 | tier1 | In-frame | 15454 | NA | 0 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | SEMA3F|RNF123 | SEMA3F | RNF123 | 3 | 3 | 1 | 1 | 2 | 15 | 14 | 0.58 | 50197167 | 49742083 | tier2 | In-frame | 15552 | NA | 0 |
| LUAD | TCGA-55-6969-01A | TCGA-55-6969 | SEMA3F|RBM6 | SEMA3F | RBM6 | 3 | 3 | 1 | 1 | 33 | 37 | 36 | 0.16 | 50212621 | 50085678 | tier1 | In-frame | 15550 | NA | 0 |
| LUSC | TCGA-37-4135-01A | TCGA-37-4135 | SEMA3F|RBM6 | SEMA3F | RBM6 | 3 | 3 | 1 | 1 | 17 | 11 | 10 | 0.16 | 50197167 | 50085678 | tier1 | Out-of-frame | 15549 | non-validated | 0 |
| UCS | TCGA-N5-A4RO-01A | TCGA-N5-A4RO | SEMA3F|RBM6 | SEMA3F | RBM6 | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 0.16 | 50214294 | 50095161 | tier2 | In-frame | 15551 | NA | 0 |
| LGG | TCGA-HT-A61C-01A | TCGA-HT-A61C | CFTR|WNT2 | CFTR | WNT2 | 7 | 7 | 1 | -1 | 2 | 1 | 1 | 0.63 | 117251862 | 116960847 | tier3 | Out-of-frame | 3596 | NA | 0.37348 |
| LGG | TCGA-HT-A61C-01A | TCGA-HT-A61C | CFTR|ASZ1 | CFTR | ASZ1 | 7 | 7 | 1 | -1 | 8 | 4 | 4 | 1.4 | 117251862 | 117066989 | tier1 | Out-of-frame | 3595 | NA | 0.3742 |
| ESCA | TCGA-L5-A4OW-01A | TCGA-L5-A4OW | CYP51A1|ANKIB1 | CYP51A1 | ANKIB1 | 7 | 7 | -1 | 1 | 2 | 12 | 10 | 0.7 | 91763487 | 91924203 | tier2 | CDS-5UTR | 4507 | NA | 0.35665 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | BAD|TRMT112 | BAD | TRMT112 | 11 | 11 | -1 | -1 | 2 | 14 | 10 | 0.16 | 64051654 | 64084837 | tier2 | Out-of-frame | 1899 | NA | 0.35508 |
| BLCA | TCGA-G2-A2EF-01A | TCGA-G2-A2EF | LAP3|DDX1 | LAP3 | DDX1 | 4 | 2 | 1 | 1 | 145 | 204 | 196 | 0.22 | 17583437 | 15746274 | tier1 | In-frame | 9221 | NA | 0.36845 |
| KIRC | TCGA-CZ-5982-01A | TCGA-CZ-5982 | HS3ST1|CNTN5 | HS3ST1 | CNTN5 | 4 | 11 | -1 | 1 | 12 | 8 | 6 | 1.8 | 11430323 | 99426876 | tier1 | 5UTR-5UTR | 7964 | NA | 0.35063 |
| LUAD | TCGA-71-8520-01A | TCGA-71-8520 | CASP10|CFLAR | CASP10 | CFLAR | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.93 | 202070696 | 201994452 | tier3 | CDS-5UTR | 3018 | NA | 0.37568 |
| KIRP | TCGA-A4-A5Y0-01A | TCGA-A4-A5Y0 | CFLAR|AGBL5 | CFLAR | AGBL5 | 2 | 2 | 1 | 1 | 40 | 67 | 55 | 0.14 | 201997857 | 27290362 | tier1 | Out-of-frame | 3591 | NA | 0.37304 |
| HNSC | TCGA-P3-A6T4-01A | TCGA-P3-A6T4 | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 33 | 101 | 85 | 100 | 202005162 | 201950182 | tier1 | Out-of-frame | 3593 | NA | 0.37435 |
| UCS | TCGA-N5-A59E-01A | TCGA-N5-A59E | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 30 | 37 | 28 | 100 | 201981204 | 201950182 | tier1 | 5UTR-CDS | 3592 | NA | 0.37435 |
| UCS | TCGA-QN-A5NN-01A | TCGA-QN-A5NN | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 2 | 10 | 7 | 100 | 202014558 | 201950182 | tier3 | Out-of-frame | 3594 | NA | 0.37435 |
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