Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-G2-A2ES-01A | TCGA-G2-A2ES | TFRC|TCTEX1D2 | TFRC | TCTEX1D2 | 3 | 3 | -1 | -1 | 4 | 14 | 13 | 0.12 | 195776156 | 196042149 | tier1 | NA | 17729 | NA | 0 |
| PRAD | TCGA-G9-A9S7-01A | TCGA-G9-A9S7 | TFRC|MUTED | TFRC | MUTED | 3 | 6 | -1 | -1 | 8 | 7 | 7 | 0.49 | 195803935 | 8041501 | tier1 | In-frame | 17728 | NA | 0 |
| PRAD | TCGA-ZG-A9LN-01A | TCGA-ZG-A9LN | TFRC|TCTEX1D2 | TFRC | TCTEX1D2 | 3 | 3 | -1 | -1 | 7 | 2 | 1 | 0.12 | 195791180 | 196033883 | tier3 | In-frame | 17730 | NA | 0 |
| HNSC | TCGA-BA-7269-01A | TCGA-BA-7269 | MARK2|BPIFA2 | MARK2 | BPIFA2 | 11 | 20 | 1 | 1 | 22 | 35 | 34 | 0.19 | 63607032 | 31765953 | tier1 | Out-of-frame | 9996 | NA | 0.38315 |
| LUSC | TCGA-94-7557-01A | TCGA-94-7557 | MARK2|BUB1B | MARK2 | BUB1B | 11 | 15 | 1 | 1 | 16 | 14 | 12 | 2.2 | 63607032 | 40468678 | tier1 | In-frame | 9997 | NA | 0.38869 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 9 | 10 | 10 | 0.097 | 63607032 | 63585277 | tier1 | Out-of-frame | 10000 | NA | 0 |
| BRCA | TCGA-A7-A4SB-01A | TCGA-A7-A4SB | MARK2|FAM168A | MARK2 | FAM168A | 11 | 11 | 1 | -1 | 35 | 18 | 15 | 0.35 | 63607032 | 73179537 | tier1 | CDS-5UTR | 10002 | NA | 0.38519 |
| HNSC | TCGA-BA-A4II-01A | TCGA-BA-A4II | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 75 | 20 | 19 | 0.097 | 63668150 | 63594400 | tier1 | Out-of-frame | 9999 | NA | 0 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | MARK2|DLAT | MARK2 | DLAT | 11 | 11 | 1 | 1 | 23 | 17 | 15 | 0.75 | 63607032 | 111907997 | tier1 | Out-of-frame | 10001 | NA | 0.38547 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | MARK2|BATF2 | MARK2 | BATF2 | 11 | 11 | 1 | -1 | 38 | 24 | 21 | 0.36 | 63607032 | 64762021 | tier1 | In-frame | 9995 | NA | 0.388 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 7 | 2 | 2 | 0.097 | 63607032 | 63585277 | tier1 | Out-of-frame | 9998 | NA | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | TRHDE|ANKS1B | TRHDE | ANKS1B | 12 | 12 | 1 | -1 | 7 | 2 | 1 | 0.064 | 72956820 | 99145300 | tier2 | Out-of-frame | 18595 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | TRHDE|C12orf75 | TRHDE | C12orf75 | 12 | 12 | 1 | 1 | 9 | 7 | 7 | 0.27 | 72680734 | 105789410 | tier1 | Out-of-frame | 18596 | validated | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | TRHDE|DPY19L2 | TRHDE | DPY19L2 | 12 | 12 | 1 | -1 | 6 | 4 | 4 | 0.067 | 72680734 | 63976305 | tier1 | In-frame | 18597 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | TRHDE|SFSWAP | TRHDE | SFSWAP | 12 | 12 | 1 | 1 | 18 | 4 | 4 | 1.1 | 72969322 | 132249001 | tier1 | Out-of-frame | 18600 | NA | 0 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | TRHDE|TBC1D15 | TRHDE | TBC1D15 | 12 | 12 | 1 | 1 | 10 | 11 | 7 | 0.33 | 72771901 | 72287002 | tier1 | Out-of-frame | 18601 | non-validated | 0 |
| SKCM | TCGA-D9-A1X3-01A | TCGA-D9-A1X3 | TRHDE|NUP107 | TRHDE | NUP107 | 12 | 12 | 1 | 1 | 2 | 3 | 3 | 2.6 | 72962436 | 69128488 | tier3 | Out-of-frame | 18598 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | STK10|SH3PXD2B | STK10 | SH3PXD2B | 5 | 5 | -1 | -1 | 15 | 12 | 8 | 0.48 | 171583628 | 171849500 | tier1 | In-frame | 17047 | NA | 0 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | STK10|SNX2 | STK10 | SNX2 | 5 | 5 | -1 | 1 | 29 | 14 | 14 | 0.038 | 171614891 | 122161745 | tier1 | In-frame | 17048 | NA | 0 |
| ESCA | TCGA-2H-A9GJ-01A | TCGA-2H-A9GJ | STK10|UBTD2 | STK10 | UBTD2 | 5 | 5 | -1 | -1 | 3 | 7 | 7 | 2.5 | 171544485 | 171661362 | tier1 | In-frame | 17049 | NA | 0 |
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