Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CHOL | TCGA-W5-AA2W-01A | TCGA-W5-AA2W | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 502 | 365 | 353 | 0.91 | 123243212 | 60566344 | tier1 | In-frame | 6462 | NA | 0.38308 |
| CHOL | TCGA-ZH-A8Y5-01A | TCGA-ZH-A8Y5 | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 179 | 143 | 128 | 0.91 | 123243212 | 60461834 | tier1 | In-frame | 6463 | NA | 0.38308 |
| CHOL | TCGA-W5-AA2Z-01A | TCGA-W5-AA2Z | FGFR2|C10orf118 | FGFR2 | C10orf118 | 10 | 10 | -1 | -1 | 92 | 93 | 91 | 0.098 | 123243212 | 115910979 | tier1 | In-frame | 6464 | NA | 0 |
| CHOL | TCGA-W5-AA2Q-01A | TCGA-W5-AA2Q | FGFR2|KIAA1598 | FGFR2 | KIAA1598 | 10 | 10 | -1 | -1 | 790 | 445 | 408 | 0.19 | 123243212 | 118708508 | tier1 | In-frame | 6468 | NA | 0.38149 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 76 | 73 | 66 | 0.91 | 123243212 | 60461834 | tier1 | In-frame | 6461 | NA | 0.38308 |
| LUSC | TCGA-66-2765-01A | TCGA-66-2765 | FGFR2|KIAA1967 | FGFR2 | KIAA1967 | 10 | 8 | -1 | 1 | 40 | 11 | 9 | 0.23 | 123243212 | 22464120 | tier1 | In-frame | 6469 | NA | 0.38427 |
| OV | TCGA-24-1424-01A | TCGA-24-1424 | FGFR2|USP10 | FGFR2 | USP10 | 10 | 16 | -1 | 1 | 34 | 26 | 24 | 1.9 | 123353223 | 84792322 | tier1 | In-frame | 6472 | NA | 0.38433 |
| STAD | TCGA-BR-8080-01A | TCGA-BR-8080 | FGFR2|TACC2 | FGFR2 | TACC2 | 10 | 10 | -1 | 1 | 8 | 87 | 75 | 0.13 | 123243212 | 123996910 | tier1 | In-frame | 6471 | NA | 0.38368 |
| THCA | TCGA-BJ-A0Z0-01A | TCGA-BJ-A0Z0 | FGFR2|OFD1 | FGFR2 | OFD1 | 10 | X | -1 | 1 | 53 | 41 | 38 | 2.2 | 123243212 | 13754597 | tier1 | In-frame | 6470 | NA | 0.3833 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | FGFR2|ATE1 | FGFR2 | ATE1 | 10 | 10 | -1 | -1 | 5 | 1 | 1 | 9.9 | 123298106 | 123683844 | tier2 | In-frame | 6460 | NA | 0.38131 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | FGFR2|KIAA1598 | FGFR2 | KIAA1598 | 10 | 10 | -1 | -1 | 766 | 502 | 467 | 0.19 | 123243212 | 118708508 | tier1 | In-frame | 6467 | NA | 0.38149 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | SP100|GIGYF2 | SP100 | GIGYF2 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 0.09 | 231281043 | 233651860 | tier2 | Out-of-frame | 16635 | validated | 0 |
| CESC | TCGA-VS-A94W-01A | TCGA-VS-A94W | TNFRSF1A|SCNN1A | TNFRSF1A | SCNN1A | 12 | 12 | -1 | -1 | 12 | 4 | 3 | 0.28 | 6442903 | 6465046 | tier1 | Out-of-frame | 18341 | NA | 0 |
| SKCM | TCGA-D3-A2JN-06A | TCGA-D3-A2JN | TNFRSF1A|CHD4 | TNFRSF1A | CHD4 | 12 | 12 | -1 | -1 | 7 | 7 | 7 | 0.043 | 6450942 | 6682435 | tier1 | In-frame | 18340 | NA | 0 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | CACNB1|MLLT6 | CACNB1 | MLLT6 | 17 | 17 | -1 | 1 | 8 | 12 | 12 | 0.022 | 37339966 | 36878931 | tier1 | Out-of-frame | 2878 | non-validated | 0.37299 |
| BRCA | TCGA-BH-A1EN-01A | TCGA-BH-A1EN | CACNB1|C11orf30 | CACNB1 | C11orf30 | 17 | 11 | -1 | 1 | 32 | 15 | 14 | 0.068 | 37343732 | 76207259 | tier1 | Out-of-frame | 2873 | NA | 0 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | CACNB1|CDC6 | CACNB1 | CDC6 | 17 | 17 | -1 | 1 | 2 | 4 | 4 | 0.11 | 37351137 | 38445660 | tier2 | CDS-5UTR | 2874 | non-validated | 0.37657 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | CACNB1|FBXL20 | CACNB1 | FBXL20 | 17 | 17 | -1 | -1 | 3 | 1 | 1 | 0.36 | 37351137 | 37499494 | tier2 | In-frame | 2875 | NA | 0.36054 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | CACNB1|TANC2 | CACNB1 | TANC2 | 17 | 17 | -1 | 1 | 23 | 36 | 35 | 0.12 | 37347727 | 61151304 | tier1 | Out-of-frame | 2879 | NA | 0.36402 |
| LUAD | TCGA-97-8175-01A | TCGA-97-8175 | CACNB1|KRT40 | CACNB1 | KRT40 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.005 | 37353665 | 39137403 | tier3 | In-frame | 2877 | NA | 0.36527 |
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