Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the CDKs/cyclins in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | ANK3|CDK1 | ANK3 | CDK1 | 10 | 10 | -1 | 1 | 11 | 11 | 11 | 0.29 | 61894029 | 62539899 | tier1 | CDS-5UTR | 904 | NA | 0.36802 |
| LUAD | TCGA-55-6971-01A | TCGA-55-6971 | MCOLN2|CDK1 | MCOLN2 | CDK1 | 1 | 10 | -1 | 1 | 10 | 5 | 2 | 0.69 | 85462479 | 62539899 | tier1 | CDS-5UTR | 10104 | NA | 0.33626 |
| LUSC | TCGA-85-A513-01A | TCGA-85-A513 | CPSF6|CCNL2 | CPSF6 | CCNL2 | 12 | 1 | 1 | -1 | 3 | 2 | 2 | 0.22 | 69656342 | 1326245 | tier1 | 3UTR-CDS | 4149 | NA | 0.3724 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | CPSF6|CCNL2 | CPSF6 | CCNL2 | 12 | 1 | 1 | -1 | 4 | 3 | 3 | 0.22 | 69656342 | 1326245 | tier1 | 3UTR-CDS | 4150 | NA | 0.3724 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | SRP68|CDK3 | SRP68 | CDK3 | 17 | 17 | -1 | 1 | 21 | 12 | 12 | 0.49 | 74042119 | 74001379 | tier1 | In-frame | 16857 | NA | 0 |
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