TCCCA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the CDKs/cyclins in each cancer type

Show entries each page Jump to page Total Page: 8 Total entries: 145
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PAAD	TCGA-IB-A5SO-01A	TCGA-IB-A5SO	CDK6\|ANKIB1	CDK6	ANKIB1	7	7	-1	1	2	1	1	0.72	92404010	91924203	tier2	CDS-5UTR	3434	NA	0.38499
STAD	TCGA-RD-A8N6-01A	TCGA-RD-A8N6	CDK6\|ANKIB1	CDK6	ANKIB1	7	7	-1	1	13	86	79	0.72	92462405	91936673	tier4	In-frame	3435	NA	0.38499
BLCA	TCGA-FD-A3SP-01A	TCGA-FD-A3SP	CCNY\|ANK3	CCNY	ANK3	10	10	1	-1	4	4	4	0.17	35626135	61874089	tier1	Out-of-frame	3234	NA	0.37041
BRCA	TCGA-AR-A2LR-01A	TCGA-AR-A2LR	CCNY\|AKAP10	CCNY	AKAP10	10	17	1	-1	6	9	5	0.55	35626135	19871774	tier1	In-frame	3233	NA	0.36056
BRCA	TCGA-AR-A256-01A	TCGA-AR-A256	CCNY\|DENND1A	CCNY	DENND1A	10	9	1	-1	35	18	11	0.2	35626135	126520101	tier1	Out-of-frame	3237	validated	0.3478
BRCA	TCGA-B6-A0I8-01A	TCGA-B6-A0I8	CCNY\|ZNF496	CCNY	ZNF496	10	1	1	-1	16	10	8	0.22	35790463	247473758	tier1	In-frame	3241	NA	0.37194
ESCA	TCGA-XP-A8T6-01A	TCGA-XP-A8T6	CCNY\|ZNF248	CCNY	ZNF248	10	10	1	-1	3	6	6	0.06	35626135	38127039	tier1	Out-of-frame	3240	NA	0.36118
KIRC	TCGA-B0-4688-01A	TCGA-B0-4688	CCNY\|PTPRD	CCNY	PTPRD	10	9	1	-1	24	10	6	0.034	35819171	10033790	tier1	CDS-5UTR	3238	NA	0.36809
LUSC	TCGA-37-4130-01A	TCGA-37-4130	CCNY\|CREM	CCNY	CREM	10	10	1	1	7	4	3	0.37	35626135	35500584	tier1	Out-of-frame	3236	NA	0.38168
LUSC	TCGA-22-A5C4-01A	TCGA-22-A5C4	CCNY\|VWA3B	CCNY	VWA3B	10	2	1	1	12	8	6	0.18	35790463	98906974	tier1	In-frame	3239	NA	0.34836
THCA	TCGA-EM-A3AQ-01A	TCGA-EM-A3AQ	CCNY\|BRAF	CCNY	BRAF	10	7	1	-1	3	2	2	0.35	35626135	140482957	tier1	In-frame	3235	validated	0.38633
CHOL	TCGA-YR-A95A-01A	TCGA-YR-A95A	CCNC\|FAM201A	CCNC	FAM201A	6	9	-1	1	12	8	7	0.3	100016372	38621829	tier1	In-frame	3208	NA	0.35874
SARC	TCGA-DX-AB2T-01A	TCGA-DX-AB2T	CCNC\|MICAL1	CCNC	MICAL1	6	6	-1	-1	5	2	2	3.9	100016372	109767975	tier1	Out-of-frame	3209	NA	0.37884
BLCA	TCGA-DK-A6B2-01A	TCGA-DK-A6B2	CCND3\|TRERF1	CCND3	TRERF1	6	6	-1	-1	15	4	3	0.19	42016239	42222664	tier1	5UTR-CDS	3217	NA	0.38486
BRCA	TCGA-AR-A1AI-01A	TCGA-AR-A1AI	CCND3\|GUCA1B	CCND3	GUCA1B	6	6	-1	-1	27	29	26	1.1	42016239	42156469	tier1	5UTR-CDS	3213	NA	0.37501
GBM	TCGA-06-0129-01A	TCGA-06-0129	CCND3\|C6orf89	CCND3	C6orf89	6	6	-1	1	2	10	9	0.76	42016239	36846784	tier2	5UTR-5UTR	3210	NA	0
LUSC	TCGA-NC-A5HJ-01A	TCGA-NC-A5HJ	CCND3\|TRERF1	CCND3	TRERF1	6	6	-1	-1	7	3	3	0.19	42016239	42268487	tier1	5UTR-5UTR	3218	NA	0.38486
LUSC	TCGA-92-8063-01A	TCGA-92-8063	CCND3\|VPS52	CCND3	VPS52	6	6	-1	-1	3	1	1	0.28	42016239	33237596	tier2	5UTR-CDS	3219	NA	0.37141
PRAD	TCGA-EJ-8474-01A	TCGA-EJ-8474	CCND3\|EXOC4	CCND3	EXOC4	6	7	-1	1	4	1	1	0.1	42016239	133682245	tier3	5UTR-CDS	3212	NA	0.36929
STAD	TCGA-BR-A4QI-01A	TCGA-BR-A4QI	CCND3\|EHMT2	CCND3	EHMT2	6	6	-1	-1	9	232	204	0.1	42016239	31848625	tier1	5UTR-CDS	3211	NA	0.38179

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