TCCCA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the CDKs/cyclins in each cancer type

Show entries each page Jump to page Total Page: 8 Total entries: 145
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-AN-A0FY-01A	TCGA-AN-A0FY	AHR\|CDK14	AHR	CDK14	7	7	1	1	4	2	2	0.33	17338953	90741857	tier1	In-frame	699	NA	0.36684
LUSC	TCGA-43-7658-01A	TCGA-43-7658	AKAP9\|CDK14	AKAP9	CDK14	7	7	1	1	30	26	25	0.016	91714017	90708747	tier1	In-frame	745	NA	0.37436
LUSC	TCGA-85-8351-01A	TCGA-85-8351	DNAJC2\|CDK14	DNAJC2	CDK14	7	7	-1	1	2	2	2	0.004	102985006	90492490	tier3	In-frame	4939	NA	0.34355
PAAD	TCGA-HZ-A4BH-01A	TCGA-HZ-A4BH	CUX1\|CDK14	CUX1	CDK14	7	7	1	1	2	3	3	0.21	101758553	90376996	tier2	Out-of-frame	4447	NA	0.36928
PRAD	TCGA-YL-A9WY-01A	TCGA-YL-A9WY	ANKIB1\|CDK14	ANKIB1	CDK14	7	7	1	1	14	6	6	0.32	91875833	90836480	tier2	5UTR-3UTR	927	NA	0.34576
PRAD	TCGA-VP-A87D-01A	TCGA-VP-A87D	OCLN\|CDK14	OCLN	CDK14	5	7	1	1	12	17	14	1.2	68809936	90836480	tier1	CDS-3UTR	12001	NA	0.36608
SKCM	TCGA-EE-A20I-06A	TCGA-EE-A20I	MKLN1\|CDK14	MKLN1	CDK14	7	7	1	1	23	14	14	0.17	131082135	90376996	tier1	In-frame	10421	NA	0.34044
STAD	TCGA-BR-8484-01A	TCGA-BR-8484	SMURF1\|CDK14	SMURF1	CDK14	7	7	-1	1	97	321	303	1.1	98658222	90675212	tier1	Out-of-frame	16441	NA	0
PAAD	TCGA-IB-8127-01A	TCGA-IB-8127	FBXW8\|CDK17	FBXW8	CDK17	12	12	1	-1	2	3	1	2.4	117383333	96728643	tier2	CDS-5UTR	6378	NA	0.35539
SARC	TCGA-DX-A2J0-01A	TCGA-DX-A2J0	ELK3\|CDK17	ELK3	CDK17	12	12	1	-1	10	9	8	0.62	96617551	96694138	tier1	In-frame	5500	non-validated	0.36928
SARC	TCGA-3B-A9HS-01A	TCGA-3B-A9HS	GLIPR1\|CDK17	GLIPR1	CDK17	12	12	1	-1	27	11	10	0.87	75875859	96728643	tier1	CDS-5UTR	7106	NA	0.33728
SARC	TCGA-DX-A23V-01A	TCGA-DX-A23V	MED13L\|CDK17	MED13L	CDK17	12	12	-1	-1	5	1	1	1.4	116418555	96728643	tier2	CDS-5UTR	10176	NA	0.35693
SARC	TCGA-3B-A9HL-01A	TCGA-3B-A9HL	TDG\|CDK17	TDG	CDK17	12	12	1	-1	105	101	98	0.48	104359838	96683065	tier1	Out-of-frame	17618	NA	0
LUSC	TCGA-18-3419-01A	TCGA-18-3419	RAB3GAP1\|CCNT2	RAB3GAP1	CCNT2	2	2	1	1	11	4	4	0.3	135815656	135694411	tier1	In-frame	14086	NA	0
BRCA	TCGA-B6-A0I1-01A	TCGA-B6-A0I1	EML1\|CCNK	EML1	CCNK	14	14	1	1	3	3	3	2	100259880	99958963	tier1	CDS-5UTR	5549	non-validated	0.37656
LUAD	TCGA-44-A47G-01A	TCGA-44-A47G	YY1\|CCNK	YY1	CCNK	14	14	1	1	4	5	5	2.9	100706260	99968544	tier1	Out-of-frame	20061	NA	0
SARC	TCGA-K1-A42X-01A	TCGA-K1-A42X	HHIPL1\|CCNK	HHIPL1	CCNK	14	14	1	1	4	4	4	3.2	100111799	99973413	tier1	Out-of-frame	7744	NA	0.37642
UCS	TCGA-N6-A4VE-01A	TCGA-N6-A4VE	EML1\|CCNK	EML1	CCNK	14	14	1	1	19	12	12	2	100367376	99973413	tier1	Out-of-frame	5550	NA	0.37656
COAD	TCGA-AA-3697-01A	TCGA-AA-3697	PEX1\|CDK6	PEX1	CDK6	7	7	-1	-1	18	4	4	0.52	92157621	92355107	tier2	In-frame	12623	NA	0.382
LUAD	TCGA-44-7670-01A	TCGA-44-7670	BICD1\|CDK6	BICD1	CDK6	12	7	1	-1	3	4	3	0.3	32260478	92252400	tier1	Out-of-frame	2096	NA	0.38113

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