Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the CDKs/cyclins in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | CDK14|ORC5 | CDK14 | ORC5 | 7 | 7 | 1 | -1 | 10 | 1 | 1 | 1.3 | 90233563 | 103844682 | tier2 | In-frame | 3419 | NA | 0 |
| MESO | TCGA-TS-A8AF-01A | TCGA-TS-A8AF | CDK14|SAV1 | CDK14 | SAV1 | 7 | 14 | 1 | -1 | 2 | 1 | 1 | 2 | 90675275 | 51111732 | tier3 | In-frame | 3420 | NA | 0.36287 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | CDK14|DLD | CDK14 | DLD | 7 | 7 | 1 | 1 | 26 | 11 | 11 | 0.45 | 90233563 | 107542183 | tier1 | Out-of-frame | 3417 | NA | 0.34638 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | CDK14|EBF1 | CDK14 | EBF1 | 7 | 5 | 1 | -1 | 5 | 5 | 5 | 0.28 | 90123744 | 158126150 | tier1 | NA | 3418 | validated | 0.35311 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | CDK14|TFEC | CDK14 | TFEC | 7 | 7 | 1 | -1 | 15 | 3 | 3 | 0.1 | 90528668 | 115624567 | tier1 | CDS-5UTR | 3421 | NA | 0.35667 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | CDK17|USP30 | CDK17 | USP30 | 12 | 12 | -1 | 1 | 2 | 2 | 2 | 0.16 | 96704830 | 109505329 | tier2 | Out-of-frame | 3423 | NA | 0.34722 |
| STAD | TCGA-BR-8679-01A | TCGA-BR-8679 | CDK17|C12orf63 | CDK17 | C12orf63 | 12 | 12 | -1 | 1 | 168 | 454 | 432 | 0.034 | 96728497 | 96906764 | tier1 | In-frame | 3422 | NA | 0 |
| BLCA | TCGA-ZF-AA5H-01A | TCGA-ZF-AA5H | CDK13|DDX56 | CDK13 | DDX56 | 7 | 7 | 1 | -1 | 37 | 30 | 30 | 2.1 | 40041630 | 44609727 | tier1 | Out-of-frame | 3414 | NA | 0.35552 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | CDK13|C7orf36 | CDK13 | C7orf36 | 7 | 7 | 1 | 1 | 2 | 2 | 2 | 0.071 | 39991451 | 39649216 | tier3 | In-frame | 3413 | NA | 0 |
| BRCA | TCGA-E2-A105-01A | TCGA-E2-A105 | CDK13|TAX1BP1 | CDK13 | TAX1BP1 | 7 | 7 | 1 | 1 | 14 | 15 | 15 | 0.75 | 40041630 | 27867357 | tier1 | Out-of-frame | 3416 | NA | 0.35715 |
| COAD | TCGA-5M-AATA-01A | TCGA-5M-AATA | CDK13|RALA | CDK13 | RALA | 7 | 7 | 1 | 1 | 9 | 4 | 4 | 0.21 | 40041630 | 39745722 | tier1 | Out-of-frame | 3415 | NA | 0.37579 |
| SARC | TCGA-DX-A8BJ-01A | TCGA-DX-A8BJ | CDK13|ADCY1 | CDK13 | ADCY1 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 3.3 | 39991451 | 45649978 | tier2 | Out-of-frame | 3411 | NA | 0.34922 |
| SKCM | TCGA-3N-A9WC-06A | TCGA-3N-A9WC | CDK13|C7orf36 | CDK13 | C7orf36 | 7 | 7 | 1 | 1 | 3 | 3 | 2 | 0.071 | 40041630 | 39610105 | tier1 | Out-of-frame | 3412 | NA | 0 |
| KIRC | TCGA-B0-4815-01A | TCGA-B0-4815 | CCNT2|YSK4 | CCNT2 | YSK4 | 2 | 2 | 1 | -1 | 4 | 1 | 1 | 1.1 | 135705469 | 135722486 | tier3 | Out-of-frame | 3232 | NA | 0.37914 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | CCNT2|ACMSD | CCNT2 | ACMSD | 2 | 2 | 1 | 1 | 81 | 40 | 38 | 0.32 | 135677461 | 135602803 | tier1 | In-frame | 3230 | NA | 0.37462 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | CCNT2|ACMSD | CCNT2 | ACMSD | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 0.32 | 135677461 | 135655911 | tier3 | In-frame | 3231 | non-validated | 0.37462 |
| BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | CCNK|C9orf93 | CCNK | C9orf93 | 14 | 9 | 1 | 1 | 34 | 26 | 23 | 0.067 | 99969981 | 15920268 | tier1 | Out-of-frame | 3223 | NA | 0 |
| SARC | TCGA-DX-A6BF-01A | TCGA-DX-A6BF | CCNK|ZNF365 | CCNK | ZNF365 | 14 | 10 | 1 | 1 | 10 | 15 | 11 | 0.52 | 99961966 | 64425889 | tier1 | Out-of-frame | 3224 | NA | 0.37421 |
| BLCA | TCGA-G2-A2EF-01A | TCGA-G2-A2EF | CDK6|HEPACAM2 | CDK6 | HEPACAM2 | 7 | 7 | -1 | -1 | 137 | 92 | 86 | 0.073 | 92404010 | 92821676 | tier1 | In-frame | 3436 | NA | 0.38073 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | CDK6|STXBP6 | CDK6 | STXBP6 | 7 | 14 | -1 | -1 | 17 | 12 | 10 | 0.49 | 92462405 | 25281938 | tier1 | Out-of-frame | 3437 | NA | 0.38188 |
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