Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A3SO-01A | TCGA-FD-A3SO | CTNND1|ZNFX1 | CTNND1 | ZNFX1 | 11 | 20 | 1 | -1 | 2 | 3 | 1 | 0.49 | 57586650 | 47863418 | tier4 | 3UTR-CDS | 4379 | NA | 0.3816 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | DGUOK|STAMBP | DGUOK | STAMBP | 2 | 2 | 1 | 1 | 15 | 14 | 10 | 0.006 | 74154179 | 74086381 | tier1 | Out-of-frame | 4764 | NA | 0.3653 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | DLG1|MYO9B | DLG1 | MYO9B | 3 | 19 | -1 | 1 | 18 | 11 | 10 | 0.39 | 196921296 | 17301906 | tier1 | CDS-5UTR | 4875 | NA | 0.38583 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | DNM2|ARHGAP25 | DNM2 | ARHGAP25 | 19 | 2 | 1 | 1 | 2 | 2 | 2 | 0.004 | 10829079 | 69002353 | tier2 | Out-of-frame | 4968 | NA | 0.37765 |
| BLCA | TCGA-XF-AAMJ-01A | TCGA-XF-AAMJ | DNM2|RFX2 | DNM2 | RFX2 | 19 | 19 | 1 | -1 | 27 | 8 | 6 | 0.068 | 10916643 | 5997224 | tier1 | Out-of-frame | 4986 | NA | 0.38133 |
| BLCA | TCGA-KQ-A41P-01A | TCGA-KQ-A41P | DNMBP|KIAA0494 | DNMBP | KIAA0494 | 10 | 1 | -1 | -1 | 3 | 1 | 1 | 4.7 | 101648582 | 47144308 | tier2 | Out-of-frame | 4999 | NA | 0.3674 |
| BLCA | TCGA-FJ-A3ZE-01A | TCGA-FJ-A3ZE | DNMT1|EMR1 | DNMT1 | EMR1 | 19 | 19 | -1 | 1 | 2 | 4 | 4 | 0.17 | 10266529 | 6890492 | tier3 | In-frame | 5003 | NA | 0.37161 |
| BLCA | TCGA-K4-A3WS-01A | TCGA-K4-A3WS | DNMT3B|DUSP15 | DNMT3B | DUSP15 | 20 | 20 | 1 | -1 | 12 | 3 | 2 | 0.076 | 31376818 | 30457400 | tier1 | CDS-5UTR | 5012 | NA | 0.3586 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | DUSP16|GPR19 | DUSP16 | GPR19 | 12 | 12 | -1 | -1 | 8 | 15 | 11 | 0.018 | 12639962 | 12837441 | tier1 | CDS-5UTR | 5181 | NA | 0.37367 |
| BLCA | TCGA-C4-A0F0-01A | TCGA-C4-A0F0 | DYNC2H1|C11orf70 | DYNC2H1 | C11orf70 | 11 | 11 | 1 | 1 | 48 | 36 | 26 | 0.31 | 102999734 | 101918546 | tier1 | Out-of-frame | 5217 | NA | 0 |
| BLCA | TCGA-HQ-A5ND-01A | TCGA-HQ-A5ND | EFHD2|CXCR5 | EFHD2 | CXCR5 | 1 | 11 | 1 | 1 | 2 | 12 | 9 | 0.39 | 15756826 | 118754475 | tier3 | 3UTR-5UTR | 5349 | NA | 0.35889 |
| BLCA | TCGA-G2-AA3B-01A | TCGA-G2-AA3B | EFNA5|MCC | EFNA5 | MCC | 5 | 5 | -1 | -1 | 3 | 1 | 1 | 0.45 | 107006190 | 112720909 | tier2 | In-frame | 5358 | NA | 0.37707 |
| BLCA | TCGA-GC-A6I3-01A | TCGA-GC-A6I3 | EGFR|GRB10 | EGFR | GRB10 | 7 | 7 | 1 | -1 | 4 | 5 | 5 | 0.55 | 55087058 | 50742355 | tier1 | In-frame | 5375 | NA | 0.39182 |
| BLCA | TCGA-BT-A0S7-01A | TCGA-BT-A0S7 | EP300|MCHR1 | EP300 | MCHR1 | 22 | 22 | 1 | 1 | 61 | 37 | 36 | 0.023 | 41489102 | 41076953 | tier1 | In-frame | 5611 | NA | 0.39059 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | EPB41|HGSNAT | EPB41 | HGSNAT | 1 | 8 | 1 | 1 | 92 | 97 | 96 | 1.1 | 29323831 | 43013718 | tier1 | In-frame | 5629 | NA | 0.37408 |
| BLCA | TCGA-GV-A3JZ-01A | TCGA-GV-A3JZ | EPB41|PIGV | EPB41 | PIGV | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 0.57 | 29241280 | 27120604 | tier2 | 5UTR-CDS | 5631 | NA | 0.37426 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | EPB41L1|ATP9A | EPB41L1 | ATP9A | 20 | 20 | 1 | -1 | 10 | 7 | 7 | 0.057 | 34700402 | 50346517 | tier1 | 5UTR-CDS | 5635 | NA | 0.36888 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | EPHX2|PTK2B | EPHX2 | PTK2B | 8 | 8 | 1 | 1 | 29 | 9 | 8 | 0.53 | 27375589 | 27308266 | tier1 | In-frame | 5684 | NA | 0.38662 |
| BLCA | TCGA-BT-A20Q-01A | TCGA-BT-A20Q | EPN2|KCNJ12 | EPN2 | KCNJ12 | 17 | 17 | 1 | 1 | 4 | 83 | 55 | 0.035 | 19140844 | 21311831 | tier1 | 5UTR-5UTR | 5688 | non-validated | 0.36596 |
| BLCA | TCGA-DK-A1A3-01A | TCGA-DK-A1A3 | ERBB2|PPP1R1B | ERBB2 | PPP1R1B | 17 | 17 | 1 | 1 | 22 | 15 | 13 | 3.8 | 37866734 | 37790136 | tier4 | In-frame | 5723 | NA | 0.38487 |
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