Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | USPL1|IGSF8 | USPL1 | IGSF8 | 13 | 1 | 1 | -1 | 16 | 8 | 5 | 3.9 | 31205611 | 160063961 | tier1 | In-frame | 19447 | NA | 0 |
| BRCA | TCGA-B6-A0IQ-01A | TCGA-B6-A0IQ | UTRN|ECT2L | UTRN | ECT2L | 6 | 6 | 1 | 1 | 22 | 27 | 26 | 0.55 | 144898424 | 139222085 | tier1 | Out-of-frame | 19455 | non-validated | 0 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | UTRN|LYRM4 | UTRN | LYRM4 | 6 | 6 | 1 | -1 | 25 | 17 | 14 | 0.19 | 144795895 | 5109725 | tier1 | In-frame | 19461 | NA | 0 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | UTRN|PARK2 | UTRN | PARK2 | 6 | 6 | 1 | -1 | 5 | 4 | 4 | 0.043 | 145051622 | 162683797 | tier1 | Out-of-frame | 19464 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | UTRN|SGK1 | UTRN | SGK1 | 6 | 6 | 1 | -1 | 4 | 1 | 1 | 0.4 | 144999714 | 134528569 | tier2 | Out-of-frame | 19466 | NA | 0 |
| BRCA | TCGA-AR-A2LJ-01A | TCGA-AR-A2LJ | UVRAG|KIRREL3 | UVRAG | KIRREL3 | 11 | 11 | 1 | -1 | 14 | 4 | 4 | 0.56 | 75728024 | 126432807 | tier1 | Out-of-frame | 19475 | NA | 0 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | UVRAG|PAK1 | UVRAG | PAK1 | 11 | 11 | 1 | -1 | 25 | 19 | 16 | 0.045 | 75827059 | 77034405 | tier1 | Out-of-frame | 19484 | validated | 0 |
| BRCA | TCGA-LL-A7SZ-01A | TCGA-LL-A7SZ | VAPB|CDH12 | VAPB | CDH12 | 20 | 5 | 1 | -1 | 5 | 4 | 3 | 4.1 | 57009761 | 21802529 | tier1 | In-frame | 19506 | NA | 0 |
| BRCA | TCGA-D8-A147-01A | TCGA-D8-A147 | VASP|CYP2S1 | VASP | CYP2S1 | 19 | 19 | 1 | 1 | 19 | 24 | 22 | 0.061 | 46011034 | 41711863 | tier1 | Out-of-frame | 19512 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | VDAC1|SKP1 | VDAC1 | SKP1 | 5 | 5 | -1 | -1 | 5 | 10 | 10 | 1.7 | 133340338 | 133509713 | tier1 | 5UTR-CDS | 19540 | NA | 0 |
| BRCA | TCGA-AR-A0TS-01A | TCGA-AR-A0TS | VGLL4|SYNPR | VGLL4 | SYNPR | 3 | 3 | -1 | 1 | 30 | 31 | 29 | 0.36 | 11744445 | 63542219 | tier1 | Out-of-frame | 19560 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | VMP1|CLTC | VMP1 | CLTC | 17 | 17 | 1 | 1 | 26 | 31 | 29 | 0.6 | 57816308 | 57721637 | tier1 | In-frame | 19590 | NA | 0 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | VPS13B|EFR3A | VPS13B | EFR3A | 8 | 8 | 1 | 1 | 11 | 4 | 3 | 0.79 | 100205285 | 132952746 | tier1 | In-frame | 19615 | NA | 0 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | VPS13B|PPP1R16A | VPS13B | PPP1R16A | 8 | 8 | 1 | 1 | 11 | 10 | 7 | 0.39 | 100589861 | 145721844 | tier1 | CDS-5UTR | 19621 | NA | 0 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | VPS35|SLC6A2 | VPS35 | SLC6A2 | 16 | 16 | -1 | 1 | 8 | 10 | 9 | 0.2 | 46702842 | 55690556 | tier1 | CDS-5UTR | 19645 | non-validated | 0 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | VPS37C|SLC3A2 | VPS37C | SLC3A2 | 11 | 11 | -1 | 1 | 31 | 57 | 47 | 3 | 60928863 | 62651929 | tier1 | 5UTR-CDS | 19647 | NA | 0 |
| BRCA | TCGA-OL-A5RW-01A | TCGA-OL-A5RW | VPS53|RTN4RL1 | VPS53 | RTN4RL1 | 17 | 17 | -1 | -1 | 2 | 9 | 8 | 0.42 | 600658 | 1841102 | tier2 | Out-of-frame | 19664 | NA | 0 |
| BRCA | TCGA-E9-A244-01A | TCGA-E9-A244 | VTCN1|NUP88 | VTCN1 | NUP88 | 1 | 17 | -1 | -1 | 91 | 114 | 105 | 2.8 | 117695713 | 5292280 | tier1 | Out-of-frame | 19690 | NA | 0 |
| BRCA | TCGA-AO-A0JI-01A | TCGA-AO-A0JI | WAC|APBB1IP | WAC | APBB1IP | 10 | 10 | 1 | 1 | 109 | 103 | 99 | 1.3 | 28824686 | 26849034 | tier1 | Out-of-frame | 19699 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | WAC|APBB1IP | WAC | APBB1IP | 10 | 10 | 1 | 1 | 36 | 39 | 31 | 1.3 | 28872434 | 26855890 | tier4 | In-frame | 19700 | NA | 0 |
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