Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 17 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-4Z-AA7S-01A | TCGA-4Z-AA7S | RAB3IP|CD63 | RAB3IP | CD63 | 12 | 12 | 1 | -1 | 1020 | 954 | 907 | 5.1 | 70132811 | 56120045 | tier1 | 5UTR-CDS | 14096 | NA | 0 |
| BLCA | TCGA-ZF-AA5H-01A | TCGA-ZF-AA5H | RALA|CAMK2B | RALA | CAMK2B | 7 | 7 | 1 | -1 | 170 | 146 | 138 | 0.46 | 39663424 | 44260500 | tier1 | 5UTR-CDS | 14214 | NA | 0 |
| BLCA | TCGA-BT-A20W-01A | TCGA-BT-A20W | RANBP10|SLC12A4 | RANBP10 | SLC12A4 | 16 | 16 | -1 | -1 | 5 | 2 | 2 | 3.1 | 67805937 | 67988676 | tier1 | In-frame | 14250 | NA | 0 |
| BLCA | TCGA-4Z-AA7O-01A | TCGA-4Z-AA7O | RBM4B|FCHSD2 | RBM4B | FCHSD2 | 11 | 11 | -1 | -1 | 2 | 2 | 2 | 1.3 | 66444139 | 72726930 | tier2 | CDS-5UTR | 14483 | NA | 0 |
| BLCA | TCGA-FD-A3SJ-01A | TCGA-FD-A3SJ | RHOA|CACNA2D2 | RHOA | CACNA2D2 | 3 | 3 | -1 | -1 | 29 | 11 | 10 | 0.11 | 49449253 | 50431599 | tier1 | 5UTR-CDS | 14649 | NA | 0 |
| BLCA | TCGA-K4-A5RH-01A | TCGA-K4-A5RH | RHOC|DDX21 | RHOC | DDX21 | 1 | 10 | -1 | 1 | 2 | 35 | 30 | 0.37 | 113243755 | 70723858 | tier3 | NA | 14656 | NA | 0 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | RICTOR|HCN1 | RICTOR | HCN1 | 5 | 5 | -1 | -1 | 6 | 3 | 3 | 0.15 | 39074213 | 45645710 | tier1 | Out-of-frame | 14679 | NA | 0 |
| BLCA | TCGA-GC-A3I6-01A | TCGA-GC-A3I6 | RIMS2|BAALC | RIMS2 | BAALC | 8 | 8 | 1 | 1 | 17 | 26 | 22 | 0.23 | 104513290 | 104225147 | tier1 | Out-of-frame | 14696 | NA | 0 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | RNF111|AQP9 | RNF111 | AQP9 | 15 | 15 | 1 | 1 | 10 | 1 | 1 | 0.62 | 59280267 | 58458872 | tier3 | 5UTR-CDS | 14729 | NA | 0 |
| BLCA | TCGA-GV-A3JZ-01A | TCGA-GV-A3JZ | RNF213|IL22RA1 | RNF213 | IL22RA1 | 17 | 1 | 1 | -1 | 5 | 2 | 2 | 0.15 | 78237577 | 24465204 | tier1 | In-frame | 14812 | NA | 0 |
| BLCA | TCGA-XF-A9SK-01A | TCGA-XF-A9SK | ROBO1|LPHN3 | ROBO1 | LPHN3 | 3 | 4 | -1 | 1 | 3 | 2 | 2 | 0.15 | 78734896 | 62679527 | tier1 | In-frame | 14867 | NA | 0 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | SCAMP4|DAZAP1 | SCAMP4 | DAZAP1 | 19 | 19 | 1 | 1 | 2 | 26 | 25 | 0.005 | 1905438 | 1417499 | tier2 | 5UTR-CDS | 15377 | NA | 0 |
| BLCA | TCGA-4Z-AA7W-01A | TCGA-4Z-AA7W | SCN8A|KCNC2 | SCN8A | KCNC2 | 12 | 12 | 1 | -1 | 5 | 2 | 2 | 0.01 | 52093575 | 75445097 | tier1 | Out-of-frame | 15429 | NA | 0 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | SEMA4C|FAM178B | SEMA4C | FAM178B | 2 | 2 | -1 | -1 | 18 | 35 | 34 | 0.36 | 97535613 | 97613639 | tier1 | 5UTR-CDS | 15561 | NA | 0 |
| BLCA | TCGA-ZF-A9RD-01A | TCGA-ZF-A9RD | SEMA4C|FAM178B | SEMA4C | FAM178B | 2 | 2 | -1 | -1 | 2 | 1 | 1 | 0.36 | 97529419 | 97544230 | tier3 | In-frame | 15562 | NA | 0 |
| BLCA | TCGA-FD-A3SQ-01A | TCGA-FD-A3SQ | SERINC2|EIF2AK2 | SERINC2 | EIF2AK2 | 1 | 2 | 1 | -1 | 2 | 9 | 6 | 0.063 | 31907521 | 37342384 | tier4 | NA | 15630 | NA | 0 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | SERINC2|PFDN2 | SERINC2 | PFDN2 | 1 | 1 | 1 | -1 | 91 | 61 | 54 | 100 | 31886151 | 161072165 | tier1 | In-frame | 15632 | NA | 0 |
| BLCA | TCGA-E7-A677-01A | TCGA-E7-A677 | SERINC2|YY1 | SERINC2 | YY1 | 1 | 14 | 1 | 1 | 2 | 10 | 7 | 0.042 | 31907524 | 100728641 | tier4 | 3UTR-CDS | 15633 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | SERINC2|ZCCHC17 | SERINC2 | ZCCHC17 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 0.038 | 31907524 | 31811804 | tier3 | 3UTR-CDS | 15635 | NA | 0 |
| BLCA | TCGA-FJ-A3ZF-01A | TCGA-FJ-A3ZF | SF3B1|HSPD1 | SF3B1 | HSPD1 | 2 | 2 | -1 | -1 | 5 | 17 | 14 | 0.11 | 198274494 | 198355020 | tier1 | Out-of-frame | 15726 | NA | 0 |
|
Showing page 17 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.