Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-AA6T-01A | TCGA-DK-AA6T | KCNQ5|CRYL1 | KCNQ5 | CRYL1 | 6 | 13 | 1 | -1 | 5 | 4 | 3 | 1.3 | 73751785 | 21006435 | tier1 | Out-of-frame | 8608 | NA | 0.36886 |
| BLCA | TCGA-ZF-A9RD-01A | TCGA-ZF-A9RD | KDM4A|PTPRF | KDM4A | PTPRF | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 1.2 | 44115923 | 44086509 | tier1 | 5UTR-CDS | 8664 | NA | 0.37646 |
| BLCA | TCGA-BT-A20Q-01A | TCGA-BT-A20Q | KDM6A|KAL1 | KDM6A | KAL1 | X | X | 1 | -1 | 4 | 7 | 6 | 0.38 | 44945224 | 8591711 | tier1 | Out-of-frame | 8708 | validated | 0.35259 |
| BLCA | TCGA-G2-A2EL-01A | TCGA-G2-A2EL | KIAA1328|DCC | KIAA1328 | DCC | 18 | 18 | 1 | 1 | 2 | 2 | 2 | 1.7 | 34664195 | 50278424 | tier2 | Out-of-frame | 8857 | NA | 0.37553 |
| BLCA | TCGA-G2-AA3D-01A | TCGA-G2-AA3D | KLC3|CLPTM1 | KLC3 | CLPTM1 | 19 | 19 | 1 | 1 | 3 | 4 | 3 | 0.046 | 45854005 | 45476344 | tier1 | In-frame | 9036 | NA | 0.37417 |
| BLCA | TCGA-4Z-AA82-01A | TCGA-4Z-AA82 | KLHDC4|SLC7A5 | KLHDC4 | SLC7A5 | 16 | 16 | -1 | -1 | 21 | 8 | 8 | 0.007 | 87782279 | 87871547 | tier1 | In-frame | 9051 | NA | 0.36209 |
| BLCA | TCGA-UY-A8OB-01A | TCGA-UY-A8OB | KPNA3|MLNR | KPNA3 | MLNR | 13 | 13 | -1 | 1 | 10 | 2 | 1 | 0.77 | 50366574 | 49796176 | tier2 | Out-of-frame | 9099 | NA | 0.37068 |
| BLCA | TCGA-FD-A6TF-01A | TCGA-FD-A6TF | KPNA4|PTPRD | KPNA4 | PTPRD | 3 | 9 | -1 | -1 | 5 | 1 | 1 | 0.27 | 160283002 | 9574781 | tier3 | CDS-5UTR | 9106 | NA | 0.37005 |
| BLCA | TCGA-XF-AAMJ-01A | TCGA-XF-AAMJ | LARGE|KCNJ4 | LARGE | KCNJ4 | 22 | 22 | -1 | -1 | 2 | 2 | 1 | 0.027 | 34000421 | 38824176 | tier3 | CDS-5UTR | 9228 | NA | 0.35999 |
| BLCA | TCGA-XF-AAN2-01A | TCGA-XF-AAN2 | LARGE|SLC5A4 | LARGE | SLC5A4 | 22 | 22 | -1 | -1 | 2 | 1 | 1 | 1.1 | 34252728 | 32631080 | tier3 | 5UTR-CDS | 9229 | NA | 0.34228 |
| BLCA | TCGA-XF-AAN7-01A | TCGA-XF-AAN7 | LDLRAD3|PAMR1 | LDLRAD3 | PAMR1 | 11 | 11 | 1 | -1 | 4 | 5 | 5 | 1.5 | 35965694 | 35463241 | tier1 | In-frame | 9278 | NA | 0.33244 |
| BLCA | TCGA-FD-A3B4-01A | TCGA-FD-A3B4 | LGALS8|RHBG | LGALS8 | RHBG | 1 | 1 | 1 | 1 | 13 | 4 | 4 | 0.46 | 236689415 | 156344398 | tier1 | CDS-5UTR | 9311 | NA | 0.36049 |
| BLCA | TCGA-ZF-AA4U-01A | TCGA-ZF-AA4U | LGR5|CNOT2 | LGR5 | CNOT2 | 12 | 12 | 1 | 1 | 36 | 40 | 37 | 0.018 | 71928966 | 70747609 | tier1 | Out-of-frame | 9313 | NA | 0.35445 |
| BLCA | TCGA-ZF-AA4U-01A | TCGA-ZF-AA4U | LGR5|PTPRR | LGR5 | PTPRR | 12 | 12 | 1 | -1 | 5 | 3 | 2 | 0.004 | 71898465 | 71286757 | tier1 | Out-of-frame | 9316 | NA | 0.37575 |
| BLCA | TCGA-CF-A3MI-01A | TCGA-CF-A3MI | LIMA1|TAOK3 | LIMA1 | TAOK3 | 12 | 12 | -1 | -1 | 2 | 4 | 4 | 0.05 | 50642416 | 118682770 | tier2 | Out-of-frame | 9335 | NA | 0.37807 |
| BLCA | TCGA-FD-A62N-01A | TCGA-FD-A62N | LIPA|TMEM132A | LIPA | TMEM132A | 10 | 11 | -1 | 1 | 16 | 5 | 4 | 1.4 | 91005433 | 60694676 | tier1 | In-frame | 9364 | NA | 0.36121 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | LLGL2|EXOC7 | LLGL2 | EXOC7 | 17 | 17 | 1 | -1 | 5 | 9 | 9 | 0.049 | 73521906 | 74083801 | tier1 | 5UTR-CDS | 9373 | NA | 0.36386 |
| BLCA | TCGA-CU-A0YN-01A | TCGA-CU-A0YN | LMBR1L|KCNK6 | LMBR1L | KCNK6 | 12 | 19 | -1 | 1 | 56 | 58 | 53 | 2.7 | 49504267 | 38817233 | tier1 | Out-of-frame | 9391 | NA | 0.34636 |
| BLCA | TCGA-GD-A2C5-01A | TCGA-GD-A2C5 | LRBA|RXFP1 | LRBA | RXFP1 | 4 | 4 | -1 | 1 | 5 | 2 | 1 | 0.41 | 151509200 | 159549790 | tier2 | Out-of-frame | 9481 | validated | 0.36375 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | LRP5|RBFOX1 | LRP5 | RBFOX1 | 11 | 16 | 1 | 1 | 4 | 6 | 3 | 2.6 | 68125315 | 6704604 | tier1 | CDS-5UTR | 9535 | NA | 0.36875 |
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