The Cancer LncRNome Atlas



Cross-cancer Type Analysis

TCLA currently contains data from 13 cancer types of the TCGA studies. The raw data of each platform were retrieved from the TCGA Data Portal and the NCI's Cancer Genomics Hub (CGHub).

Each link below contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs in multiple cancer types.

Please select the analysis type that you are interested in:

   

Detectable lncRNAs in multiple cancer types

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

  Total Page: 164 Total amount: 8189
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Ensembl IDNumber of
Cancer Types
Cancer Types sharing Detectable Expression
ENSG0000027243213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022564313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002334783BLCA; LAML; UCEC
ENSG0000022817212BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023678213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026006313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002339759BLCA; BRCA; GBM; HNSC; LUAD; LUSC; OV; SKCM; UCEC
ENSG0000022588612BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; SKCM; UCEC
ENSG0000027003112BLCA; BRCA; COAD; GBM; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027060513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024212513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000019798913BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022938813BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000018605613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002233829BLCA; BRCA; COAD; GBM; LUAD; OV; PRAD; SKCM; UCEC
ENSG000002291678BLCA; BRCA; COAD; HNSC; LUAD; LUSC; OV; UCEC
ENSG000002545452BLCA; GBM
ENSG000002699678BLCA; BRCA; KIRC; LAML; LUAD; LUSC; OV; UCEC
ENSG0000022406612BLCA; BRCA; COAD; GBM; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002244093BLCA; HNSC; LUSC
ENSG0000027011511BLCA; BRCA; GBM; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022531313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002558116BLCA; COAD; HNSC; LUSC; OV; UCEC
ENSG0000023016313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024101413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023963613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000027191413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023362113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002309559BLCA; BRCA; COAD; GBM; HNSC; KIRC; OV; PRAD; UCEC
ENSG000002245926BLCA; GBM; HNSC; LUSC; PRAD; SKCM
ENSG0000022843613BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002700407BLCA; BRCA; GBM; KIRC; LAML; LUAD; OV
ENSG0000018210913BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002280607BLCA; GBM; HNSC; LAML; LUAD; OV; UCEC
ENSG0000026179813BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002365465BLCA; HNSC; LUSC; OV; UCEC
ENSG0000025994313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000026092013BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023828713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG000002381868BLCA; BRCA; GBM; KIRC; LAML; LUAD; OV; UCEC
ENSG0000027214513BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022752712BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023491713BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022845213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000024315313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022819212BLCA; BRCA; COAD; GBM; HNSC; KIRC; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022753313BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000023469413BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022943113BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC
ENSG0000022937213BLCA; BRCA; COAD; GBM; HNSC; KIRC; LAML; LUAD; LUSC; OV; PRAD; SKCM; UCEC


  Total Page: 164 Total amount: 8189
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