TCLA Data Sets

TCLA currently contains data from 13 cancer types of the TCGA studies. The raw data of each platform were retrieved from the TCGA Data Portal and the NCI's Cancer Genomics Hub (CGHub). The table below lists the number of available samples per cancer study and data type.

Each link in the table below contains information on lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs in a given cancer type.

Please select the cancer type that you are interested in:

Cancer Type	Abbreviation of Cancer Types	RNA-seq		SNP array		DNA methylation array
		Normal	Tumor	Normal	Tumor	Normal	Tumor
Bladder Urothelial Carcinoma	BLCA	19	211	242	242
Breast Invasive Carcinoma	BRCA	106	990	1041	1041	96	716
Colon Adenocarcinoma	COAD	21	233	437	437	38	273
Glioblastoma Multiforme	GBM		167	184	184
Head and Neck Squamous Cell Carcinoma	HNSC	42	425	513	513	50	458
Kidney Renal Clear Cell Carcinoma	KIRC	72	507	520	520	160	296
Acute Myeloid Leukemia	LAML		162	200	200
Lung Adenocarcinoma	LUAD	58	481	496	496	32	437
Lung Squamous Cell Carcinoma	LUSC	50	482	493	493	42	359
Ovarian Serous Cystadenocarcinoma	OV		419	571	571
Prostate Adenocarcinoma	PRAD	45	256	258	258	49	252
Skin Cutaneous Melanoma	SKCM		334	374	374
Uterine Corpus Endometrial Carcinoma	UCEC	11	370	531	531