TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LGG	TCGA-F6-A8O4-01A	TCGA-F6-A8O4	MBTD1\|UTP18	MBTD1	UTP18	17	17	-1	1	48	78	75	0.36	49336504	49362606	tier1	5UTR-CDS	10069	NA	0.33819
PRAD	TCGA-KK-A8IC-01A	TCGA-KK-A8IC	MBTD1\|SYBU	MBTD1	SYBU	17	8	-1	-1	13	11	11	0.66	49284249	110631268	tier1	In-frame	10066	NA	0.33205
MESO	TCGA-TS-A7P6-01A	TCGA-TS-A7P6	PTBP1\|SCGB1C1	PTBP1	SCGB1C1	19	11	1	1	38	4	4	0.17	799443	194418	tier1	In-frame	13748	NA	0.37411
DLBC	TCGA-FF-8047-01A	TCGA-FF-8047	PTBP1\|PALM	PTBP1	PALM	19	19	1	1	18	7	7	1.2	804438	726138	tier1	Out-of-frame	13747	non-validated	0.3736
PRAD	TCGA-KK-A6E1-01A	TCGA-KK-A6E1	PTBP1\|UBE3C	PTBP1	UBE3C	19	7	1	1	39	22	21	0.18	803636	157009561	tier1	Out-of-frame	13749	NA	0.3763
DLBC	TCGA-FA-8693-01A	TCGA-FA-8693	LARS2\|ANO10	LARS2	ANO10	3	3	1	-1	24	15	15	1.9	45542071	43408466	tier1	Out-of-frame	9243	NA	0.3404
DLBC	TCGA-FA-A4XK-01A	TCGA-FA-A4XK	LARS2\|TBL1XR1	LARS2	TBL1XR1	3	3	1	-1	2	2	2	4.7	45461221	176769514	tier3	In-frame	9245	NA	0.37245
PRAD	TCGA-HC-7233-01A	TCGA-HC-7233	LARS2\|SEC22A	LARS2	SEC22A	3	3	1	1	3	1	1	0.2	45500378	122978371	tier3	In-frame	9244	non-validated	0.34508
BRCA	TCGA-BH-A18T-01A	TCGA-BH-A18T	PIK3C2A\|RP11-113D6.6	PIK3C2A	RP11-113D6.6	11	11	-1	-1	15	7	5	0.085	17115808	18162158	tier1	In-frame	12829	NA	0.35141
LAML	TCGA-AB-3007-03A	TCGA-AB-3007	PLAUR\|MARK4	PLAUR	MARK4	19	19	-1	1	3	1	1	0.022	44174218	45762247	tier3	Out-of-frame	12949	non-validated	0.38962
CESC	TCGA-VS-A8Q8-01A	TCGA-VS-A8Q8	PLAUR\|SMG9	PLAUR	SMG9	19	19	-1	-1	27	14	12	0.003	44171733	44254899	tier1	CDS-5UTR	12950	NA	0.36943
LUAD	TCGA-NJ-A4YQ-01A	TCGA-NJ-A4YQ	PLAUR\|ZNF576	PLAUR	ZNF576	19	19	-1	1	4	3	2	0.49	44169468	44102983	tier1	In-frame	12952	NA	0.37779
SARC	TCGA-FX-A3TO-01A	TCGA-FX-A3TO	PLAUR\|WDR45	PLAUR	WDR45	19	X	-1	-1	49	7	7	1.1	44169468	48935771	tier1	CDS-5UTR	12951	NA	0.37381
ESCA	TCGA-L5-A43J-01A	TCGA-L5-A43J	PPP5C\|AP2S1	PPP5C	AP2S1	19	19	1	-1	5	103	92	0.8	46857246	47349399	tier1	In-frame	13444	NA	0.37661
HNSC	TCGA-QK-A8ZB-01A	TCGA-QK-A8ZB	MAP4K3\|EML4	MAP4K3	EML4	2	2	-1	1	3	2	2	0.02	39605207	42507990	tier1	In-frame	9905	NA	0.38163
KIRP	TCGA-G7-6792-01A	TCGA-G7-6792	MAP4K3\|SMC6	MAP4K3	SMC6	2	2	-1	-1	5	5	4	0.23	39664033	17927218	tier1	CDS-5UTR	9907	NA	0.37938
LUAD	TCGA-67-3770-01A	TCGA-67-3770	MAP4K3\|PTPLAD2	MAP4K3	PTPLAD2	2	9	-1	-1	15	3	2	0.004	39664033	21029397	tier1	Out-of-frame	9906	NA	0.37788
PRAD	TCGA-KK-A8IL-01A	TCGA-KK-A8IL	MAP4K3\|TMEM178	MAP4K3	TMEM178	2	2	-1	1	6	4	4	0.021	39513993	39934189	tier1	Out-of-frame	9908	NA	0.37733
KIRC	TCGA-CJ-5681-01A	TCGA-CJ-5681	GABRA3\|DIAPH2	GABRA3	DIAPH2	X	X	-1	1	39	3	3	1.2	151376473	96684649	tier1	In-frame	6900	non-validated	0.35611
SKCM	TCGA-GN-A26D-06A	TCGA-GN-A26D	GABRA3\|SARNP	GABRA3	SARNP	X	12	-1	-1	36	29	28	1.6	151393235	56146624	tier1	CDS-3UTR	6901	NA	0.33886

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