Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | ADAM22|RUNDC3B | ADAM22 | RUNDC3B | 7 | 7 | 1 | 1 | 2 | 4 | 4 | 0.11 | 87607727 | 87445456 | tier3 | In-frame | 414 | NA | 0.36299 |
| SARC | TCGA-DX-A2J1-01A | TCGA-DX-A2J1 | MGST1|COL27A1 | MGST1 | COL27A1 | 12 | 9 | 1 | 1 | 3 | 4 | 3 | 4.5 | 16500644 | 117044557 | tier1 | 5UTR-CDS | 10329 | NA | 0.34243 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | ST3GAL1|COL22A1 | ST3GAL1 | COL22A1 | 8 | 8 | -1 | -1 | 11 | 9 | 5 | 0.037 | 134487962 | 139715590 | tier1 | In-frame | 16929 | NA | 0 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | ST3GAL1|EEA1 | ST3GAL1 | EEA1 | 8 | 12 | -1 | -1 | 2 | 3 | 3 | 0.2 | 134467091 | 93229203 | tier4 | NA | 16930 | NA | 0 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 10 | 6 | 6 | 0.4 | 111702528 | 112101838 | tier1 | CDS-5UTR | 14574 | non-validated | 0 |
| SKCM | TCGA-D9-A4Z3-01A | TCGA-D9-A4Z3 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 0.4 | 111803953 | 112041265 | tier3 | CDS-5UTR | 14576 | NA | 0 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 7 | 9 | 7 | 0.4 | 111732683 | 112101838 | tier1 | CDS-5UTR | 14575 | NA | 0 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 21 | 13 | 11 | 0.4 | 111803953 | 112041265 | tier2 | CDS-5UTR | 14578 | NA | 0 |
| UCS | TCGA-N5-A4R8-01A | TCGA-N5-A4R8 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 33 | 16 | 12 | 0.4 | 111803953 | 112101838 | tier1 | CDS-5UTR | 14577 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | REV3L|LAMA4 | REV3L | LAMA4 | 6 | 6 | -1 | -1 | 5 | 2 | 2 | 0.21 | 111803953 | 112466135 | tier1 | In-frame | 14579 | NA | 0 |
| BRCA | TCGA-EW-A6SD-01A | TCGA-EW-A6SD | REV3L|ARHGEF25 | REV3L | ARHGEF25 | 6 | 12 | -1 | 1 | 4 | 1 | 1 | 0.28 | 111803953 | 58008472 | tier2 | Out-of-frame | 14572 | NA | 0 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | REV3L|SOBP | REV3L | SOBP | 6 | 6 | -1 | 1 | 6 | 14 | 12 | 0.17 | 111726673 | 107854663 | tier1 | In-frame | 14580 | NA | 0 |
| LGG | TCGA-CS-4942-01A | TCGA-CS-4942 | REV3L|FN3KRP | REV3L | FN3KRP | 6 | 17 | -1 | 1 | 14 | 4 | 4 | 2.5 | 111628564 | 80684356 | tier1 | In-frame | 14573 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | REV3L|TMEM117 | REV3L | TMEM117 | 6 | 12 | -1 | 1 | 7 | 5 | 4 | 0.007 | 111643772 | 44238427 | tier1 | CDS-5UTR | 14581 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | REV3L|TRAF3IP2 | REV3L | TRAF3IP2 | 6 | 6 | -1 | -1 | 33 | 13 | 12 | 0.57 | 111803953 | 111897024 | tier1 | Out-of-frame | 14582 | non-validated | 0 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | REV3L|TRAF3IP2 | REV3L | TRAF3IP2 | 6 | 6 | -1 | -1 | 23 | 11 | 10 | 0.57 | 111714079 | 111913297 | tier1 | Out-of-frame | 14583 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | ODZ1|TMEM170A | ODZ1 | TMEM170A | X | 16 | -1 | -1 | 2 | 3 | 3 | 0.66 | 123695521 | 75485737 | tier2 | In-frame | 12005 | NA | 0.35317 |
| LIHC | TCGA-FV-A495-01A | TCGA-FV-A495 | MASP2|EXOSC10 | MASP2 | EXOSC10 | 1 | 1 | -1 | -1 | 2 | 3 | 3 | 3.5 | 11090233 | 11137708 | tier3 | Out-of-frame | 10015 | non-validated | 0.37129 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | BAZ1B|ZP3 | BAZ1B | ZP3 | 7 | 7 | -1 | 1 | 11 | 9 | 9 | 0.11 | 72873866 | 76069567 | tier1 | In-frame | 1938 | NA | 0.37023 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | BAZ1B|BCL7B | BAZ1B | BCL7B | 7 | 7 | -1 | -1 | 16 | 9 | 9 | 0.43 | 72879769 | 72966572 | tier1 | In-frame | 1933 | NA | 0.36693 |
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