Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | DNM3|UHRF1 | DNM3 | UHRF1 | 1 | 19 | 1 | 1 | 3 | 3 | 3 | 3.9 | 171890961 | 4941540 | tier1 | Out-of-frame | 4997 | validated | 0.37382 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | PLEKHA5|UHRF1 | PLEKHA5 | UHRF1 | 12 | 19 | 1 | 1 | 8 | 3 | 2 | 0.94 | 19422819 | 4941540 | tier1 | In-frame | 13005 | NA | 0.3718 |
| BLCA | TCGA-UY-A9PD-01A | TCGA-UY-A9PD | SLFN11|CCL14 | SLFN11 | CCL14 | 17 | 17 | -1 | -1 | 98 | 52 | 49 | 0.022 | 33693966 | 34310924 | tier1 | 5UTR-CDS | 16317 | NA | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | AKAP10|CCL3 | AKAP10 | CCL3 | 17 | 17 | -1 | -1 | 13 | 11 | 11 | 0.031 | 19880905 | 34416643 | tier1 | In-frame | 722 | NA | 0.36882 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | CYFIP1|ACACA | CYFIP1 | ACACA | 15 | 17 | 1 | -1 | 5 | 10 | 10 | 2.6 | 22935964 | 35634007 | tier1 | In-frame | 4491 | NA | 0.36935 |
| BRCA | TCGA-D8-A1J9-01A | TCGA-D8-A1J9 | MYO1D|ACACA | MYO1D | ACACA | 17 | 17 | -1 | -1 | 7 | 11 | 7 | 2 | 31075954 | 35482715 | tier1 | Out-of-frame | 10968 | NA | 0.37205 |
| BRCA | TCGA-E2-A1IN-01A | TCGA-E2-A1IN | NCOR1|ACACA | NCOR1 | ACACA | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.27 | 15960828 | 35627752 | tier2 | Out-of-frame | 11229 | NA | 0.37917 |
| BRCA | TCGA-E9-A1N6-01A | TCGA-E9-A1N6 | NF1|ACACA | NF1 | ACACA | 17 | 17 | 1 | -1 | 7 | 10 | 9 | 0.39 | 29422387 | 35518964 | tier1 | In-frame | 11393 | NA | 0.3786 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | EFCAB5|ACACA | EFCAB5 | ACACA | 17 | 17 | 1 | -1 | 3 | 3 | 3 | 0.046 | 28296385 | 35564714 | tier1 | In-frame | 5336 | NA | 0.36664 |
| PCPG | TCGA-WB-A81W-01A | TCGA-WB-A81W | GRIP1|NR2E3 | GRIP1 | NR2E3 | 12 | 15 | -1 | 1 | 2 | 2 | 2 | 1.4 | 66932858 | 72099357 | tier2 | CDS-5UTR | 7460 | NA | 0.37552 |
| PRAD | TCGA-ZG-A9ND-01A | TCGA-ZG-A9ND | NEO1|NR2E3 | NEO1 | NR2E3 | 15 | 15 | 1 | 1 | 6 | 2 | 2 | 1.8 | 73470768 | 72109893 | tier1 | Out-of-frame | 11380 | NA | 0.37842 |
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