Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2P-01A | TCGA-DX-AB2P | SEL1L|FNTB | SEL1L | FNTB | 14 | 14 | -1 | 1 | 42 | 10 | 10 | 0.06 | 81950569 | 65390709 | tier1 | In-frame | 15536 | NA | 0 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | RASSF5|IKBKE | RASSF5 | IKBKE | 1 | 1 | 1 | 1 | 5 | 3 | 3 | 0.12 | 206711622 | 206644499 | tier1 | CDS-5UTR | 14387 | NA | 0 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | NCOA4|MSMB | NCOA4 | MSMB | 10 | 10 | 1 | 1 | 69 | 72 | 66 | 0.87 | 51565296 | 51555731 | tier1 | 5UTR-CDS | 11211 | NA | 0.36057 |
| LUSC | TCGA-77-6843-01A | TCGA-77-6843 | MARCH8|MSMB | MARCH8 | MSMB | 10 | 10 | -1 | 1 | 2 | 3 | 3 | 100 | 45984815 | 51555731 | tier3 | In-frame | 9989 | non-validated | 0 |
| LUSC | TCGA-33-AASL-01A | TCGA-33-AASL | NCOA4|MSMB | NCOA4 | MSMB | 10 | 10 | 1 | 1 | 2 | 2 | 2 | 0.87 | 51581378 | 51555731 | tier4 | In-frame | 11210 | NA | 0.36057 |
| TGCT | TCGA-2G-AAFV-01A | TCGA-2G-AAFV | NCOA4|MSMB | NCOA4 | MSMB | 10 | 10 | 1 | 1 | 28 | 18 | 18 | 0.87 | 51585599 | 51555731 | tier1 | In-frame | 11209 | NA | 0.36057 |
| BRCA | TCGA-D8-A1XT-01A | TCGA-D8-A1XT | SHB|AKR1CL1 | SHB | AKR1CL1 | 9 | 10 | -1 | -1 | 4 | 4 | 4 | 100 | 37955880 | 5204983 | tier1 | Out-of-frame | 15867 | NA | 0 |
| BRCA | TCGA-C8-A275-01A | TCGA-C8-A275 | STARD3|STRADA | STARD3 | STRADA | 17 | 17 | 1 | -1 | 8 | 26 | 23 | 0.023 | 37793484 | 61791468 | tier1 | 5UTR-CDS | 17010 | NA | 0 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | TANC2|STRADA | TANC2 | STRADA | 17 | 17 | 1 | -1 | 106 | 94 | 89 | 0.33 | 61086987 | 61805773 | tier1 | CDS-5UTR | 17383 | NA | 0 |
| LGG | TCGA-DU-5854-01A | TCGA-DU-5854 | PARK2|STRADA | PARK2 | STRADA | 6 | 17 | -1 | -1 | 10 | 4 | 3 | 1.4 | 161969886 | 61781942 | tier1 | In-frame | 12291 | NA | 0.37819 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | HELZ|TAF15 | HELZ | TAF15 | 17 | 17 | -1 | 1 | 20 | 18 | 16 | 3.7 | 65124767 | 34144720 | tier1 | Out-of-frame | 7697 | NA | 0.37421 |
| BRCA | TCGA-LD-A7W5-01A | TCGA-LD-A7W5 | PDCD7|TAF15 | PDCD7 | TAF15 | 15 | 17 | -1 | 1 | 9 | 9 | 8 | 0.76 | 65421370 | 34144720 | tier1 | In-frame | 12456 | NA | 0.37527 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | TTC19|MMP28 | TTC19 | MMP28 | 17 | 17 | 1 | -1 | 5 | 1 | 1 | 0.24 | 15903559 | 34097331 | tier2 | Out-of-frame | 18830 | NA | 0 |
| LUAD | TCGA-44-7669-01A | TCGA-44-7669 | RNF215|GRIN2B | RNF215 | GRIN2B | 22 | 12 | -1 | -1 | 2 | 1 | 1 | 0.44 | 30817650 | 13906849 | tier2 | NA | 14823 | NA | 0 |
| BRCA | TCGA-A2-A0T3-01A | TCGA-A2-A0T3 | ETV4|CCL16 | ETV4 | CCL16 | 17 | 17 | -1 | -1 | 4 | 3 | 3 | 0.13 | 41610042 | 34305299 | tier1 | In-frame | 5860 | NA | 0.36895 |
| LGG | TCGA-TQ-A7RP-01A | TCGA-TQ-A7RP | ARHGAP23|CCL18 | ARHGAP23 | CCL18 | 17 | 17 | 1 | 1 | 4 | 2 | 2 | 1 | 36623572 | 34397807 | tier1 | In-frame | 1232 | NA | 0.37502 |
| LIHC | TCGA-DD-AADC-01A | TCGA-DD-AADC | EXOSC5|FCGBP | EXOSC5 | FCGBP | 19 | 19 | -1 | -1 | 3 | 5 | 5 | 0.57 | 41893419 | 40354532 | tier1 | In-frame | 5921 | NA | 0.35874 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | COBL|DUSP14 | COBL | DUSP14 | 7 | 17 | -1 | 1 | 30 | 17 | 15 | 0.31 | 51152863 | 35870779 | tier1 | CDS-5UTR | 3956 | NA | 0.36157 |
| LUAD | TCGA-53-7624-01A | TCGA-53-7624 | MAPKAP1|UHRF1 | MAPKAP1 | UHRF1 | 9 | 19 | -1 | 1 | 2 | 2 | 2 | 1.8 | 128419930 | 4929234 | tier2 | In-frame | 9960 | NA | 0.37371 |
| OV | TCGA-13-1407-01A | TCGA-13-1407 | ATG4D|UHRF1 | ATG4D | UHRF1 | 19 | 19 | 1 | 1 | 2 | 3 | 3 | 0.28 | 10655001 | 4929234 | tier2 | Out-of-frame | 1629 | NA | 0.36919 |
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