Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | KCNE2|HTN3 | KCNE2 | HTN3 | 21 | 4 | 1 | 1 | 2 | 2 | 2 | 100 | 35736450 | 70898884 | tier2 | 5UTR-CDS | 8573 | NA | 0.35103 |
| LGG | TCGA-P5-A77W-01A | TCGA-P5-A77W | LRFN5|DPF3 | LRFN5 | DPF3 | 14 | 14 | 1 | -1 | 3 | 1 | 1 | 2.2 | 42077765 | 73238601 | tier2 | 5UTR-CDS | 9496 | NA | 0.34885 |
| SARC | TCGA-DX-A3LW-01A | TCGA-DX-A3LW | RBM39|CRYZL1 | RBM39 | CRYZL1 | 20 | 21 | -1 | -1 | 15 | 12 | 11 | 0.26 | 34304662 | 34975843 | tier1 | Out-of-frame | 14469 | validated | 0 |
| LUSC | TCGA-22-4601-01A | TCGA-22-4601 | INADL|PRSS50 | INADL | PRSS50 | 1 | 3 | 1 | -1 | 4 | 2 | 2 | 0.91 | 62393501 | 46761493 | tier1 | In-frame | 8228 | NA | 0.36964 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | C1orf9|ZCWPW2 | C1orf9 | ZCWPW2 | 1 | 3 | 1 | 1 | 4 | 2 | 2 | 1.3 | 172560211 | 28476601 | tier1 | Out-of-frame | 2622 | NA | 0 |
| COAD | TCGA-CM-5868-01A | TCGA-CM-5868 | DNAH7|ZCWPW2 | DNAH7 | ZCWPW2 | 2 | 3 | -1 | 1 | 3 | 3 | 3 | 0.22 | 196933421 | 28520305 | tier1 | In-frame | 4922 | NA | 0.34521 |
| STAD | TCGA-BR-8365-01A | TCGA-BR-8365 | PARD3|COLQ | PARD3 | COLQ | 10 | 3 | -1 | -1 | 2 | 8 | 6 | 0.67 | 34759013 | 15520889 | tier3 | In-frame | 12268 | NA | 0.37761 |
| BRCA | TCGA-BH-A1FN-01A | TCGA-BH-A1FN | NAP1L1|STK38L | NAP1L1 | STK38L | 12 | 12 | -1 | 1 | 17 | 23 | 21 | 0.94 | 76478347 | 27450643 | tier1 | 5UTR-5UTR | 11081 | NA | 0.37358 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | RANBP10|LCAT | RANBP10 | LCAT | 16 | 16 | -1 | -1 | 52 | 35 | 29 | 1.2 | 67771916 | 67974381 | tier1 | Out-of-frame | 14248 | NA | 0 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | CTNND1|TMX2 | CTNND1 | TMX2 | 11 | 11 | 1 | 1 | 37 | 25 | 23 | 0.009 | 57529518 | 57505080 | tier1 | 5UTR-CDS | 4375 | NA | 0.3799 |
| KIRC | TCGA-BP-4962-01A | TCGA-BP-4962 | CTNND1|TMX2 | CTNND1 | TMX2 | 11 | 11 | 1 | 1 | 6 | 4 | 3 | 0.009 | 57529518 | 57505080 | tier1 | 5UTR-CDS | 4376 | NA | 0.3799 |
| BRCA | TCGA-LL-A5YP-01A | TCGA-LL-A5YP | MYO9A|HEXA | MYO9A | HEXA | 15 | 15 | -1 | -1 | 7 | 6 | 4 | 0.35 | 72410021 | 72648958 | tier1 | 5UTR-CDS | 11013 | NA | 0.36694 |
| BRCA | TCGA-AR-A1AO-01A | TCGA-AR-A1AO | C20orf194|CEACAM16 | C20orf194 | CEACAM16 | 20 | 19 | -1 | 1 | 2 | 2 | 2 | 1.3 | 3274785 | 45208860 | tier3 | Out-of-frame | 2641 | NA | 0 |
| LGG | TCGA-DU-7010-01A | TCGA-DU-7010 | ATG5|CEACAM16 | ATG5 | CEACAM16 | 6 | 19 | -1 | 1 | 43 | 11 | 9 | 100 | 106763976 | 45206619 | tier1 | Out-of-frame | 1630 | NA | 0.35583 |
| LUAD | TCGA-49-4488-01A | TCGA-49-4488 | AD000671.1|CEACAM16 | AD000671.1 | CEACAM16 | 19 | 19 | 1 | 1 | 8 | 5 | 5 | 0.45 | 36228164 | 45213768 | tier2 | Out-of-frame | 401 | NA | 0.33995 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | CLPTM1|CEACAM16 | CLPTM1 | CEACAM16 | 19 | 19 | 1 | 1 | 14 | 5 | 5 | 0.011 | 45465332 | 45213768 | tier4 | Out-of-frame | 3840 | NA | 0.35017 |
| KICH | TCGA-KM-8438-01A | TCGA-KM-8438 | MYH9|DNASE1 | MYH9 | DNASE1 | 22 | 16 | -1 | 1 | 2 | 6 | 1 | 0.16 | 36697580 | 3704962 | tier4 | CDS-5UTR | 10903 | non-validated | 0.38145 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | GNAL|CSNK1E | GNAL | CSNK1E | 18 | 22 | 1 | -1 | 2 | 2 | 2 | 0.18 | 11753944 | 38699253 | tier2 | Out-of-frame | 7177 | NA | 0.38232 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | TMEM184B|CSNK1E | TMEM184B | CSNK1E | 22 | 22 | -1 | -1 | 2 | 6 | 6 | 0.029 | 38668890 | 38699253 | tier3 | 5UTR-CDS | 18000 | NA | 0 |
| READ | TCGA-AF-5654-01A | TCGA-AF-5654 | TMEM184B|CSNK1E | TMEM184B | CSNK1E | 22 | 22 | -1 | -1 | 2 | 4 | 4 | 0.029 | 38620792 | 38699253 | tier2 | In-frame | 17999 | NA | 0 |
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