TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
UCEC	TCGA-PG-A914-01A	TCGA-PG-A914	MAP4K4\|REV1	MAP4K4	REV1	2	2	1	-1	17	20	16	0.75	102472600	100055772	tier1	Out-of-frame	9911	NA	0.38194
BLCA	TCGA-UY-A78K-01A	TCGA-UY-A78K	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	5	7	3	1.2	99342702	99463273	tier1	CDS-5UTR	10311	NA	0
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	10	7	7	1.2	99342702	99463273	tier1	CDS-5UTR	10305	NA	0
BRCA	TCGA-B6-A0X1-01A	TCGA-B6-A0X1	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	5	2	2	1.2	99251685	99463273	tier1	CDS-5UTR	10307	NA	0
BRCA	TCGA-PE-A5DC-01A	TCGA-PE-A5DC	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	34	15	13	1.2	99342702	99449460	tier1	Out-of-frame	10310	NA	0
LUAD	TCGA-75-6211-01A	TCGA-75-6211	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	11	6	5	1.2	99342702	99463273	tier1	CDS-5UTR	10306	NA	0
READ	TCGA-EI-6885-01A	TCGA-EI-6885	MGAT4A\|FAM178B	MGAT4A	FAM178B	2	2	-1	-1	15	15	13	0.86	99342702	97568444	tier1	Out-of-frame	10312	NA	0.3555
STAD	TCGA-BR-8289-01A	TCGA-BR-8289	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	2	8	8	1.2	99271908	99463273	tier2	CDS-5UTR	10308	NA	0
UCS	TCGA-N8-A4PP-01A	TCGA-N8-A4PP	MGAT4A\|C2orf55	MGAT4A	C2orf55	2	2	-1	-1	88	29	28	1.2	99279509	99411134	tier1	Out-of-frame	10309	NA	0
LGG	TCGA-DU-7006-01A	TCGA-DU-7006	RPS6KA2\|MCHR2	RPS6KA2	MCHR2	6	6	-1	-1	9	9	4	0.14	167271688	100404050	tier1	CDS-5UTR	15047	NA	0
BRCA	TCGA-E2-A15D-01A	TCGA-E2-A15D	RPS6KA2\|PSMG4	RPS6KA2	PSMG4	6	6	-1	1	2	2	2	0.98	166872937	3263918	tier3	Out-of-frame	15048	NA	0
SARC	TCGA-IE-A3OV-01A	TCGA-IE-A3OV	RPS6KA2\|KIFC1	RPS6KA2	KIFC1	6	6	-1	1	8	3	3	0.17	167040409	33365806	tier1	In-frame	15046	NA	0
SARC	TCGA-DX-A3LT-01A	TCGA-DX-A3LT	SLC6A15\|C12orf28	SLC6A15	C12orf28	12	12	-1	1	15	12	10	0.46	85306302	70297424	tier1	5UTR-CDS	16281	non-validated	0
ESCA	TCGA-L5-A891-01A	TCGA-L5-A891	LPHN1\|LGALS4	LPHN1	LGALS4	19	19	-1	-1	4	7	7	0.35	14288343	39299588	tier1	In-frame	9444	non-validated	0.36487
BRCA	TCGA-BH-A0DQ-01A	TCGA-BH-A0DQ	ACTN1\|SCGN	ACTN1	SCGN	14	6	-1	1	16	13	12	0.68	69343799	25691284	tier1	In-frame	372	NA	0.37692
UCEC	TCGA-A5-A3LP-01A	TCGA-A5-A3LP	ACTN1\|DCAF5	ACTN1	DCAF5	14	14	-1	-1	11	9	8	0.066	69445669	69529228	tier1	Out-of-frame	371	NA	0.3742
BRCA	TCGA-A8-A09Q-01A	TCGA-A8-A09Q	RPS6KA6\|HDX	RPS6KA6	HDX	X	X	-1	-1	13	18	15	2	83441069	83588850	tier2	In-frame	15057	NA	0
OV	TCGA-13-1408-01A	TCGA-13-1408	ALDH3A2\|IFNK	ALDH3A2	IFNK	17	9	1	1	5	5	4	0.55	19575269	27526005	tier1	CDS-3UTR	803	NA	0.34027
PRAD	TCGA-G9-6494-01A	TCGA-G9-6494	ALDH3A2\|PITPNM2	ALDH3A2	PITPNM2	17	12	1	-1	10	8	8	0.078	19568360	123477216	tier2	In-frame	804	NA	0.36764
LUSC	TCGA-22-5474-01A	TCGA-22-5474	TFRC\|CPA3	TFRC	CPA3	3	3	-1	1	53	32	32	1.1	195787051	148614307	tier1	Out-of-frame	17727	NA	0

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