Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | TESK2|UTS2 | TESK2 | UTS2 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.61 | 45923236 | 7910982 | tier2 | Out-of-frame | 17666 | NA | 0 |
| ESCA | TCGA-JY-A6F8-01A | TCGA-JY-A6F8 | TESK2|C8A | TESK2 | C8A | 1 | 1 | -1 | 1 | 2 | 8 | 8 | 0.9 | 45851584 | 57349154 | tier2 | In-frame | 17662 | NA | 0 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | TESK2|GPR37L1 | TESK2 | GPR37L1 | 1 | 1 | -1 | 1 | 16 | 7 | 6 | 0.27 | 45923236 | 202096869 | tier1 | In-frame | 17664 | non-validated | 0 |
| CESC | TCGA-EK-A2IR-01A | TCGA-EK-A2IR | TESK2|GNA12 | TESK2 | GNA12 | 1 | 7 | -1 | -1 | 10 | 7 | 5 | 0.48 | 45851584 | 2834777 | tier1 | In-frame | 17663 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | TESK2|KNCN | TESK2 | KNCN | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 0.39 | 45923236 | 47015674 | tier1 | Out-of-frame | 17665 | NA | 0 |
| KIRP | TCGA-HE-7130-01A | TCGA-HE-7130 | PTPN21|TTC8 | PTPN21 | TTC8 | 14 | 14 | -1 | 1 | 18 | 16 | 14 | 0.49 | 89016582 | 89305796 | tier1 | In-frame | 13827 | NA | 0.37439 |
| TGCT | TCGA-2G-AAGG-01A | TCGA-2G-AAGG | ATP2B1|YAF2 | ATP2B1 | YAF2 | 12 | 12 | -1 | -1 | 17 | 18 | 18 | 0.29 | 90021455 | 42593037 | tier1 | In-frame | 1722 | NA | 0.37597 |
| BRCA | TCGA-E9-A5UO-01A | TCGA-E9-A5UO | ATP2B1|KCNC2 | ATP2B1 | KCNC2 | 12 | 12 | -1 | -1 | 22 | 13 | 12 | 0.12 | 90004970 | 75442097 | tier1 | Out-of-frame | 1719 | NA | 0.36773 |
| BRCA | TCGA-A2-A0CZ-01A | TCGA-A2-A0CZ | ATP2B1|IKBIP | ATP2B1 | IKBIP | 12 | 12 | -1 | -1 | 3 | 2 | 1 | 0.066 | 90024282 | 99028191 | tier3 | Out-of-frame | 1718 | NA | 0.36363 |
| CESC | TCGA-C5-A7CH-01A | TCGA-C5-A7CH | ATP2B1|CEP290 | ATP2B1 | CEP290 | 12 | 12 | -1 | -1 | 5 | 3 | 3 | 0.013 | 90010579 | 88478629 | tier1 | In-frame | 1713 | NA | 0.36602 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|C8orf34 | ATP2B1 | C8orf34 | 12 | 8 | -1 | 1 | 16 | 24 | 24 | 0.26 | 90102996 | 69621229 | tier1 | NA | 1712 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|CORO1C | ATP2B1 | CORO1C | 12 | 12 | -1 | -1 | 7 | 2 | 2 | 0.007 | 90102996 | 109095099 | tier1 | NA | 1714 | NA | 0.37089 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | ATP2B1|DCDC2 | ATP2B1 | DCDC2 | 12 | 6 | -1 | -1 | 19 | 6 | 6 | 1.2 | 90102996 | 24302272 | tier1 | NA | 1715 | non-validated | 0.36863 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ATP2B1|EXOC4 | ATP2B1 | EXOC4 | 12 | 7 | -1 | 1 | 3 | 4 | 4 | 0.3 | 90049456 | 133749044 | tier1 | Out-of-frame | 1716 | validated | 0.3704 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | ATP2B1|GRIP1 | ATP2B1 | GRIP1 | 12 | 12 | -1 | -1 | 5 | 1 | 1 | 1.3 | 89996820 | 66935730 | tier2 | Out-of-frame | 1717 | NA | 0.37385 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|LIN7A | ATP2B1 | LIN7A | 12 | 12 | -1 | -1 | 2 | 5 | 5 | 0.44 | 90003714 | 81283148 | tier2 | Out-of-frame | 1720 | NA | 0.37594 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|RBM19 | ATP2B1 | RBM19 | 12 | 12 | -1 | -1 | 31 | 25 | 25 | 0.007 | 90102996 | 114282593 | tier1 | NA | 1721 | NA | 0.36864 |
| LUAD | TCGA-53-7813-01A | TCGA-53-7813 | MAP4K4|MUCL1 | MAP4K4 | MUCL1 | 2 | 12 | 1 | 1 | 4 | 3 | 3 | 0.25 | 102315000 | 55248900 | tier1 | Out-of-frame | 9910 | NA | 0.37995 |
| BRCA | TCGA-LL-A7T0-01A | TCGA-LL-A7T0 | MAP4K4|LYG2 | MAP4K4 | LYG2 | 2 | 2 | 1 | -1 | 3 | 2 | 2 | 1.7 | 102460773 | 99861921 | tier1 | Out-of-frame | 9909 | NA | 0.37988 |
| STAD | TCGA-HU-A4H4-01A | TCGA-HU-A4H4 | MAP4K4|SYF2 | MAP4K4 | SYF2 | 2 | 1 | 1 | -1 | 5 | 69 | 63 | 0.21 | 102315000 | 25551591 | tier1 | Out-of-frame | 9912 | NA | 0.37951 |
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