Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-QK-A8ZA-01A | TCGA-QK-A8ZA | ATP11A|CARKD | ATP11A | CARKD | 13 | 13 | 1 | 1 | 12 | 20 | 19 | 2.9 | 113344769 | 111274563 | tier1 | Out-of-frame | 1667 | NA | 0.34294 |
| KIRC | TCGA-BP-5173-01A | TCGA-BP-5173 | ATP11A|C13orf35 | ATP11A | C13orf35 | 13 | 13 | 1 | 1 | 2 | 2 | 2 | 0.2 | 113344769 | 113337588 | tier3 | Out-of-frame | 1665 | NA | 0 |
| LUAD | TCGA-44-2655-01A | TCGA-44-2655 | ATP11A|C13orf35 | ATP11A | C13orf35 | 13 | 13 | 1 | 1 | 3 | 5 | 5 | 0.2 | 113439571 | 113337588 | tier1 | Out-of-frame | 1664 | NA | 0 |
| LUAD | TCGA-MN-A4N1-01A | TCGA-MN-A4N1 | ATP11A|C13orf35 | ATP11A | C13orf35 | 13 | 13 | 1 | 1 | 9 | 8 | 8 | 0.2 | 113439571 | 113337588 | tier1 | Out-of-frame | 1666 | NA | 0 |
| PAAD | TCGA-US-A774-01A | TCGA-US-A774 | ATP11A|SPACA7 | ATP11A | SPACA7 | 13 | 13 | 1 | 1 | 2 | 4 | 4 | 0.88 | 113490565 | 113086758 | tier3 | In-frame | 1672 | NA | 0.33935 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | ATP11A|ADPRHL1 | ATP11A | ADPRHL1 | 13 | 13 | 1 | -1 | 14 | 7 | 6 | 0.59 | 113439571 | 114088182 | tier1 | Out-of-frame | 1663 | NA | 0.34572 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | MAST4|NLN | MAST4 | NLN | 5 | 5 | 1 | 1 | 22 | 31 | 29 | 0.022 | 66449408 | 65118609 | tier1 | In-frame | 10029 | validated | 0.35643 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | MAST4|PLIN2 | MAST4 | PLIN2 | 5 | 9 | 1 | -1 | 20 | 12 | 10 | 0.22 | 65892846 | 19131269 | tier1 | NA | 10030 | NA | 0.35051 |
| BLCA | TCGA-XF-AAMT-01A | TCGA-XF-AAMT | MAST4|ST8SIA4 | MAST4 | ST8SIA4 | 5 | 5 | 1 | -1 | 4 | 6 | 6 | 1.4 | 66429474 | 100192100 | tier1 | Out-of-frame | 10031 | NA | 0.35325 |
| LUAD | TCGA-49-4514-01A | TCGA-49-4514 | MAST4|MRPS27 | MAST4 | MRPS27 | 5 | 5 | 1 | -1 | 5 | 3 | 3 | 1.1 | 66396420 | 71516975 | tier1 | Out-of-frame | 10028 | NA | 0.35302 |
| LUAD | TCGA-91-6840-01A | TCGA-91-6840 | GPR116|MEP1A | GPR116 | MEP1A | 6 | 6 | -1 | 1 | 85 | 97 | 93 | 0.17 | 46832779 | 46802315 | tier1 | In-frame | 7357 | non-validated | 0.367 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | KCNAB2|POLB | KCNAB2 | POLB | 1 | 8 | 1 | 1 | 22 | 23 | 22 | 0.016 | 6052848 | 42202471 | tier1 | 5UTR-CDS | 8568 | NA | 0.3722 |
| LGG | TCGA-DU-6395-01A | TCGA-DU-6395 | KCNAB2|KIF1B | KCNAB2 | KIF1B | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 1.6 | 6052848 | 10316305 | tier3 | 5UTR-CDS | 8567 | NA | 0.37049 |
| SARC | TCGA-X6-A8C3-01A | TCGA-X6-A8C3 | RORA|LOXL1 | RORA | LOXL1 | 15 | 15 | -1 | 1 | 60 | 53 | 52 | 0.91 | 60884586 | 74235195 | tier1 | In-frame | 14908 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | RORA|FSTL1 | RORA | FSTL1 | 15 | 3 | -1 | -1 | 27 | 19 | 17 | 0.66 | 60884586 | 120123818 | tier1 | Out-of-frame | 14907 | NA | 0 |
| SARC | TCGA-SI-AA8B-01A | TCGA-SI-AA8B | RORA|PTPN9 | RORA | PTPN9 | 15 | 15 | -1 | -1 | 6 | 11 | 11 | 0.44 | 60884586 | 75798344 | tier1 | Out-of-frame | 14910 | NA | 0 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | RORA|ALMS1 | RORA | ALMS1 | 15 | 2 | -1 | 1 | 3 | 1 | 1 | 0.41 | 61521252 | 73716761 | tier2 | Out-of-frame | 14904 | NA | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | RORA|ARNT2 | RORA | ARNT2 | 15 | 15 | -1 | 1 | 7 | 5 | 5 | 0.73 | 61521252 | 80885941 | tier1 | Out-of-frame | 14905 | NA | 0 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | RORA|NUP210L | RORA | NUP210L | 15 | 1 | -1 | -1 | 2 | 2 | 2 | 0.19 | 61521252 | 154076686 | tier2 | Out-of-frame | 14909 | NA | 0 |
| LGG | TCGA-DB-5278-01A | TCGA-DB-5278 | RORA|CLSTN2 | RORA | CLSTN2 | 15 | 3 | -1 | 1 | 3 | 7 | 7 | 0.54 | 61521252 | 139894793 | tier1 | In-frame | 14906 | validated | 0 |
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