Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 33 | 20 | 17 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6488 | NA | 0.38077 |
| PRAD | TCGA-EJ-A7NM-01A | TCGA-EJ-A7NM | FGFR3|AES | FGFR3 | AES | 4 | 19 | 1 | -1 | 353 | 328 | 292 | 0.076 | 1808661 | 3061255 | tier1 | In-frame | 6473 | NA | 0.3845 |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | OTUD5|GRIPAP1 | OTUD5 | GRIPAP1 | X | X | -1 | -1 | 7 | 2 | 2 | 0.026 | 48814239 | 48855916 | tier1 | In-frame | 12114 | NA | 0.35925 |
| KIRC | TCGA-BP-4774-01A | TCGA-BP-4774 | INPP5A|CSTA | INPP5A | CSTA | 10 | 3 | 1 | 1 | 2 | 1 | 1 | 0.3 | 134563349 | 122056394 | tier2 | In-frame | 8243 | NA | 0.3568 |
| BLCA | TCGA-CU-A3KJ-01A | TCGA-CU-A3KJ | INPP5A|C10orf93 | INPP5A | C10orf93 | 10 | 10 | 1 | -1 | 14 | 11 | 9 | 0.26 | 134579350 | 134622408 | tier1 | In-frame | 8242 | NA | 0 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | INPP5A|DLG2 | INPP5A | DLG2 | 10 | 11 | 1 | -1 | 8 | 2 | 2 | 0.83 | 134464009 | 84245774 | tier1 | In-frame | 8244 | NA | 0.37932 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | INPP5A|FAM149B1 | INPP5A | FAM149B1 | 10 | 10 | 1 | 1 | 6 | 8 | 8 | 0.013 | 134563349 | 74999070 | tier1 | In-frame | 8245 | NA | 0.35136 |
| BRCA | TCGA-AO-A03O-01A | TCGA-AO-A03O | INPP5A|KIF20B | INPP5A | KIF20B | 10 | 10 | 1 | 1 | 2 | 2 | 2 | 0.69 | 134579350 | 91512324 | tier2 | Out-of-frame | 8248 | NA | 0.35677 |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | INPP5A|AFAP1L2 | INPP5A | AFAP1L2 | 10 | 10 | 1 | -1 | 2 | 3 | 2 | 0.035 | 134351675 | 116100490 | tier2 | Out-of-frame | 8240 | NA | 0.35474 |
| LUAD | TCGA-78-8640-01A | TCGA-78-8640 | INPP5A|JAKMIP3 | INPP5A | JAKMIP3 | 10 | 10 | 1 | 1 | 3 | 3 | 3 | 0.2 | 134503959 | 133950523 | tier1 | Out-of-frame | 8247 | NA | 0.35266 |
| OV | TCGA-24-2023-01A | TCGA-24-2023 | INPP5A|C10orf91 | INPP5A | C10orf91 | 10 | 10 | 1 | 1 | 2 | 5 | 4 | 2.4 | 134351675 | 134259200 | tier2 | Out-of-frame | 8241 | NA | 0 |
| OV | TCGA-04-1362-01A | TCGA-04-1362 | INPP5A|FRMD4A | INPP5A | FRMD4A | 10 | 10 | 1 | -1 | 4 | 2 | 2 | 8.8 | 134351675 | 14372182 | tier1 | CDS-5UTR | 8246 | NA | 0.35672 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | INPP5A|LRRC27 | INPP5A | LRRC27 | 10 | 10 | 1 | 1 | 92 | 68 | 65 | 0.86 | 134421460 | 134174961 | tier1 | In-frame | 8249 | NA | 0.35101 |
| UCS | TCGA-NF-A4WU-01A | TCGA-NF-A4WU | INPP5A|LRRC27 | INPP5A | LRRC27 | 10 | 10 | 1 | 1 | 8 | 2 | 2 | 0.86 | 134351675 | 134161488 | tier1 | Out-of-frame | 8250 | NA | 0.35101 |
| PRAD | TCGA-YL-A8SQ-01B | TCGA-YL-A8SQ | ATP11A|DHRS12 | ATP11A | DHRS12 | 13 | 13 | 1 | -1 | 8 | 6 | 6 | 0.62 | 113516889 | 52365393 | tier1 | In-frame | 1670 | NA | 0.34602 |
| STAD | TCGA-BR-A4CR-01A | TCGA-BR-A4CR | ATP11A|ULK4 | ATP11A | ULK4 | 13 | 3 | 1 | -1 | 3 | 42 | 37 | 1.5 | 113530255 | 41831335 | tier1 | In-frame | 1674 | NA | 0.36058 |
| MESO | TCGA-3U-A98D-01A | TCGA-3U-A98D | ATP11A|COL14A1 | ATP11A | COL14A1 | 13 | 8 | 1 | 1 | 9 | 15 | 13 | 0.59 | 113344769 | 121160045 | tier1 | CDS-5UTR | 1668 | NA | 0.36573 |
| BLCA | TCGA-G2-AA3D-01A | TCGA-G2-AA3D | ATP11A|SPACA7 | ATP11A | SPACA7 | 13 | 13 | 1 | 1 | 3 | 5 | 5 | 0.88 | 113490565 | 113086758 | tier1 | In-frame | 1671 | NA | 0.33935 |
| BRCA | TCGA-D8-A143-01A | TCGA-D8-A143 | ATP11A|TUBGCP3 | ATP11A | TUBGCP3 | 13 | 13 | 1 | -1 | 3 | 3 | 3 | 0.35 | 113490565 | 113209319 | tier1 | In-frame | 1673 | NA | 0.35874 |
| COAD | TCGA-A6-5656-01A | TCGA-A6-5656 | ATP11A|CYHR1 | ATP11A | CYHR1 | 13 | 8 | 1 | -1 | 2 | 1 | 1 | 0.046 | 113530255 | 145678843 | tier2 | In-frame | 1669 | non-validated | 0.35249 |
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