Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-14-1823-01A | TCGA-14-1823 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 2 | 2 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6478 | non-validated | 0.38077 |
| GBM | TCGA-14-1829-01A | TCGA-14-1829 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 4 | 3 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6479 | NA | 0.38077 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3525 | 19783 | 17411 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6481 | NA | 0.38077 |
| GBM | TCGA-76-4925-01A | TCGA-76-4925 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 243 | 485 | 389 | 0.12 | 1808661 | 1739325 | tier1 | In-frame | 6487 | NA | 0.38077 |
| HNSC | TCGA-CR-6473-01A | TCGA-CR-6473 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1222 | 512 | 454 | 0.12 | 1808661 | 1739325 | tier1 | In-frame | 6496 | NA | 0.38077 |
| HNSC | TCGA-CV-7100-01A | TCGA-CV-7100 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1499 | 859 | 792 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6497 | non-validated | 0.38077 |
| HNSC | TCGA-CV-7177-01A | TCGA-CV-7177 | FGFR3|TPRG1 | FGFR3 | TPRG1 | 4 | 3 | 1 | 1 | 2 | 2 | 2 | 0.84 | 1795770 | 189028175 | tier3 | Out-of-frame | 6512 | NA | 0.37948 |
| KIRP | TCGA-A4-7287-01A | TCGA-A4-7287 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2190 | 2597 | 2299 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6489 | NA | 0.38077 |
| KIRP | TCGA-DW-7839-01A | TCGA-DW-7839 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6500 | NA | 0.38077 |
| LGG | TCGA-CS-6186-01A | TCGA-CS-6186 | FGFR3|ELAVL3 | FGFR3 | ELAVL3 | 4 | 19 | 1 | -1 | 308 | 76 | 65 | 0.72 | 1808661 | 11577642 | tier1 | In-frame | 6474 | non-validated | 0.38386 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | FGFR3|FBXO28 | FGFR3 | FBXO28 | 4 | 1 | 1 | 1 | 1286 | 716 | 649 | 100 | 1808661 | 224340844 | tier1 | In-frame | 6475 | NA | 0.38292 |
| LGG | TCGA-FG-7643-01A | TCGA-FG-7643 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3421 | 3247 | 2979 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6502 | validated | 0.38077 |
| LGG | TCGA-P5-A72U-01A | TCGA-P5-A72U | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 878 | 719 | 616 | 0.12 | 1808661 | 1732899 | tier1 | In-frame | 6506 | NA | 0.38077 |
| LIHC | TCGA-DD-A1EK-01A | TCGA-DD-A1EK | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1527 | 1727 | 1605 | 0.12 | 1801539 | 1746245 | tier1 | Out-of-frame | 6498 | NA | 0.38077 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 8 | 8 | 7 | 0.12 | 1803470 | 1746245 | tier1 | Out-of-frame | 6483 | non-validated | 0.38077 |
| LUSC | TCGA-22-4607-01A | TCGA-22-4607 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 156 | 18 | 17 | 0.12 | 1808661 | 1737000 | tier1 | Out-of-frame | 6480 | NA | 0.38077 |
| LUSC | TCGA-34-2608-01A | TCGA-34-2608 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 19 | 16 | 14 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6482 | NA | 0.38077 |
| LUSC | TCGA-39-5024-01A | TCGA-39-5024 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1181 | 497 | 440 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6484 | NA | 0.38077 |
| LUSC | TCGA-63-7022-01A | TCGA-63-7022 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 0.12 | 1808661 | 1746245 | tier3 | In-frame | 6485 | NA | 0.38077 |
| LUSC | TCGA-66-2786-01A | TCGA-66-2786 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4157 | 4264 | 3894 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6486 | NA | 0.38077 |
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