Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-78-7536-01A | TCGA-78-7536 | HDAC4|SNX18 | HDAC4 | SNX18 | 2 | 5 | -1 | 1 | 17 | 17 | 14 | 0.49 | 240158289 | 53839009 | tier1 | In-frame | 7622 | NA | 0.38244 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | HDAC4|UPB1 | HDAC4 | UPB1 | 2 | 22 | -1 | 1 | 5 | 7 | 7 | 0.43 | 240274373 | 24890077 | tier1 | CDS-5UTR | 7624 | NA | 0.37869 |
| BLCA | TCGA-CF-A3MF-01A | TCGA-CF-A3MF | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 507 | 142 | 129 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6490 | non-validated | 0.38077 |
| BLCA | TCGA-CF-A3MG-01A | TCGA-CF-A3MG | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 918 | 1808 | 1520 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6491 | NA | 0.38077 |
| BLCA | TCGA-CF-A3MH-01A | TCGA-CF-A3MH | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1831 | 3686 | 2998 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6492 | NA | 0.38077 |
| BLCA | TCGA-CF-A47S-01A | TCGA-CF-A47S | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4470 | 4735 | 3751 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6493 | NA | 0.38077 |
| BLCA | TCGA-CF-A47T-01A | TCGA-CF-A47T | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 5 | 5 | 4 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6494 | NA | 0.38077 |
| BLCA | TCGA-CF-A8HY-01A | TCGA-CF-A8HY | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 572 | 477 | 431 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6495 | NA | 0.38077 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2072 | 1560 | 1418 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6501 | NA | 0.38077 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 666 | 620 | 589 | 0.12 | 1795770 | 1746245 | tier1 | Out-of-frame | 6509 | NA | 0.38077 |
| BLCA | TCGA-XF-AAMZ-01A | TCGA-XF-AAMZ | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 474 | 393 | 365 | 0.12 | 1808661 | 1741429 | tier4 | In-frame | 6510 | NA | 0.38077 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 32 | 10 | 10 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6499 | NA | 0.38077 |
| CESC | TCGA-LP-A7HU-01A | TCGA-LP-A7HU | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 2 | 2 | 0.12 | 1808661 | 1737458 | tier3 | In-frame | 6505 | NA | 0.38077 |
| CESC | TCGA-VS-A9UD-01A | TCGA-VS-A9UD | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 153 | 135 | 127 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6507 | NA | 0.38077 |
| CESC | TCGA-WL-A834-01A | TCGA-WL-A834 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1624 | 1664 | 1516 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6508 | NA | 0.38077 |
| CESC | TCGA-ZJ-AAXT-01A | TCGA-ZJ-AAXT | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2203 | 2582 | 2375 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6511 | NA | 0.38077 |
| ESCA | TCGA-LN-A5U5-01A | TCGA-LN-A5U5 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 17 | 15 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6503 | non-validated | 0.38077 |
| ESCA | TCGA-LN-A9FO-01A | TCGA-LN-A9FO | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 23 | 403 | 244 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6504 | NA | 0.38077 |
| GBM | TCGA-06-2567-01A | TCGA-06-2567 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.12 | 1808661 | 1741429 | tier4 | In-frame | 6476 | NA | 0.38077 |
| GBM | TCGA-14-0789-01A | TCGA-14-0789 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4 | 5 | 5 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6477 | NA | 0.38077 |
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