TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-LA-A7SW-01A	TCGA-LA-A7SW	ROCK1\|CDH2	ROCK1	CDH2	18	18	-1	-1	44	42	41	1	18571137	25532323	tier1	Out-of-frame	14881	NA	0
BRCA	TCGA-C8-A12P-01A	TCGA-C8-A12P	ROCK1\|ABHD3	ROCK1	ABHD3	18	18	-1	-1	24	19	18	0.49	18690779	19283708	tier1	In-frame	14875	NA	0
HNSC	TCGA-CV-6953-01A	TCGA-CV-6953	ROCK1\|B4GALT6	ROCK1	B4GALT6	18	18	-1	-1	12	6	6	1.1	18690779	29246335	tier1	Out-of-frame	14878	NA	0
HNSC	TCGA-CV-5434-01A	TCGA-CV-5434	ROCK1\|DCC	ROCK1	DCC	18	18	-1	1	29	18	15	0.65	18586312	50912413	tier1	In-frame	14883	NA	0
LUAD	TCGA-97-7552-01A	TCGA-97-7552	ROCK1\|CABYR	ROCK1	CABYR	18	18	-1	1	17	18	16	1.3	18690779	21735665	tier1	Out-of-frame	14880	NA	0
LUAD	TCGA-44-A47G-01A	TCGA-44-A47G	ROCK1\|GATA6	ROCK1	GATA6	18	18	-1	1	8	3	3	0.26	18690779	19780619	tier1	In-frame	14885	NA	0
LUSC	TCGA-85-8048-01A	TCGA-85-8048	ROCK1\|ABHD3	ROCK1	ABHD3	18	18	-1	-1	2	2	1	0.49	18690779	19244191	tier4	In-frame	14874	NA	0
LUSC	TCGA-56-A49D-01A	TCGA-56-A49D	ROCK1\|RNF38	ROCK1	RNF38	18	9	-1	-1	10	6	4	0.1	18690779	36390613	tier1	In-frame	14891	NA	0
PAAD	TCGA-IB-A7M4-01A	TCGA-IB-A7M4	ROCK1\|ANKRD29	ROCK1	ANKRD29	18	18	-1	-1	2	2	2	0.8	18595392	21181273	tier3	In-frame	14877	NA	0
PAAD	TCGA-XN-A8T3-01A	TCGA-XN-A8T3	ROCK1\|OSBPL1A	ROCK1	OSBPL1A	18	18	-1	-1	4	5	4	0.29	18603581	21883682	tier1	In-frame	14890	NA	0
PAAD	TCGA-XN-A8T5-01A	TCGA-XN-A8T5	ROCK1\|THNSL1	ROCK1	THNSL1	18	10	-1	1	2	1	1	0.9	18690779	25310671	tier3	CDS-5UTR	14892	NA	0
SARC	TCGA-QQ-A5V9-01A	TCGA-QQ-A5V9	ROCK1\|C20orf103	ROCK1	C20orf103	18	20	-1	1	23	38	36	5.9	18619433	9510289	tier1	In-frame	14879	NA	0
SKCM	TCGA-YD-A9TA-06A	TCGA-YD-A9TA	ROCK1\|MAP1B	ROCK1	MAP1B	18	5	-1	1	9	5	5	0.23	18546878	71479570	tier1	In-frame	14889	NA	0
STAD	TCGA-BR-8677-01A	TCGA-BR-8677	ROCK1\|ANKRD29	ROCK1	ANKRD29	18	18	-1	-1	2	2	2	0.8	18690779	21229157	tier2	In-frame	14876	NA	0
PRAD	TCGA-EJ-7327-01A	TCGA-EJ-7327	PDK3\|CADPS	PDK3	CADPS	X	3	1	-1	2	1	1	1.3	24517017	62648069	tier3	Out-of-frame	12549	NA	0.36341
SKCM	TCGA-EB-A4OY-01A	TCGA-EB-A4OY	PDK3\|NAV3	PDK3	NAV3	X	12	1	1	10	4	3	2.3	24523415	78579381	tier1	In-frame	12550	NA	0.35586
SKCM	TCGA-GN-A264-06A	TCGA-GN-A264	HDAC4\|PDE11A	HDAC4	PDE11A	2	2	-1	-1	19	17	15	0.12	240274373	178769914	tier1	Out-of-frame	7620	non-validated	0.3801
BLCA	TCGA-BL-A13J-01A	TCGA-BL-A13J	HDAC4\|SATB2	HDAC4	SATB2	2	2	-1	-1	3	1	1	0.57	240158289	200298237	tier2	In-frame	7621	non-validated	0.38082
LGG	TCGA-CS-6666-01A	TCGA-CS-6666	HDAC4\|BRAT1	HDAC4	BRAT1	2	7	-1	-1	5	2	2	0.077	240002791	2594081	tier1	CDS-5UTR	7619	NA	0.37794
LIHC	TCGA-CC-A3MA-01A	TCGA-CC-A3MA	HDAC4\|THAP4	HDAC4	THAP4	2	2	-1	-1	105	84	81	0.22	240274373	242545888	tier1	In-frame	7623	NA	0.38241

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