Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | CACNB1|KRT222 | CACNB1 | KRT222 | 17 | 17 | -1 | -1 | 7 | 95 | 91 | 1.2 | 37347727 | 38812882 | tier2 | Out-of-frame | 2876 | NA | 0.35879 |
| PRAD | TCGA-G9-6367-01A | TCGA-G9-6367 | PKM2|ACPP | PKM2 | ACPP | 15 | 3 | -1 | 1 | 2 | 1 | 1 | 1 | 72491370 | 132036250 | tier3 | 3UTR-5UTR | 12910 | NA | 0.36576 |
| LGG | TCGA-HT-7467-01A | TCGA-HT-7467 | PKM2|ERBB3 | PKM2 | ERBB3 | 15 | 12 | -1 | 1 | 2 | 25 | 19 | 0.16 | 72491373 | 56492035 | tier4 | 3UTR-5UTR | 12912 | NA | 0.38486 |
| LGG | TCGA-DU-8161-01A | TCGA-DU-8161 | PKM2|SLC1A3 | PKM2 | SLC1A3 | 15 | 5 | -1 | 1 | 2 | 1 | 1 | 0.009 | 72491373 | 36606541 | tier3 | NA | 12916 | NA | 0.36469 |
| THCA | TCGA-ET-A25G-01A | TCGA-ET-A25G | PKM2|PTN | PKM2 | PTN | 15 | 7 | -1 | -1 | 2 | 7 | 3 | 100 | 72491370 | 136938384 | tier3 | 3UTR-CDS | 12915 | NA | 0.36811 |
| COAD | TCGA-A6-6648-01A | TCGA-A6-6648 | PKM2|CLCN3 | PKM2 | CLCN3 | 15 | 4 | -1 | 1 | 2 | 26 | 15 | 2.2 | 72491373 | 170623929 | tier4 | NA | 12911 | NA | 0.37002 |
| PRAD | TCGA-HC-7742-01A | TCGA-HC-7742 | PKM2|USP7 | PKM2 | USP7 | 15 | 16 | -1 | -1 | 2 | 9 | 7 | 0.15 | 72491373 | 9030586 | tier3 | NA | 12918 | NA | 0.37066 |
| CESC | TCGA-EK-A2RO-01A | TCGA-EK-A2RO | PKM2|FOXP1 | PKM2 | FOXP1 | 15 | 3 | -1 | -1 | 2 | 114 | 88 | 0.19 | 72491373 | 71007472 | tier3 | NA | 12913 | NA | 0.37048 |
| CESC | TCGA-ZJ-AAXT-01A | TCGA-ZJ-AAXT | PKM2|FOXP1 | PKM2 | FOXP1 | 15 | 3 | -1 | -1 | 2 | 60 | 56 | 0.19 | 72491373 | 71007472 | tier4 | NA | 12914 | NA | 0.37048 |
| LUSC | TCGA-33-4586-01A | TCGA-33-4586 | PKM2|TNNT1 | PKM2 | TNNT1 | 15 | 19 | -1 | -1 | 2 | 11 | 8 | 0.028 | 72491370 | 55646910 | tier4 | NA | 12917 | non-validated | 0.36555 |
| LGG | TCGA-DU-A7TC-01A | TCGA-DU-A7TC | TP53BP1|DAPK2 | TP53BP1 | DAPK2 | 15 | 15 | -1 | -1 | 4 | 8 | 7 | 0.59 | 43771595 | 64263760 | tier1 | In-frame | 18471 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | TP53BP1|ATP8B4 | TP53BP1 | ATP8B4 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.11 | 43762056 | 50366382 | tier2 | Out-of-frame | 18470 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | TP53BP1|DMXL2 | TP53BP1 | DMXL2 | 15 | 15 | -1 | -1 | 10 | 5 | 5 | 0.005 | 43724392 | 51809364 | tier4 | In-frame | 18472 | validated | 0 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | TP53BP1|STAU2 | TP53BP1 | STAU2 | 15 | 8 | -1 | -1 | 39 | 17 | 15 | 0.92 | 43720214 | 74440039 | tier1 | In-frame | 18473 | NA | 0 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | PRKCZ|GABRD | PRKCZ | GABRD | 1 | 1 | 1 | 1 | 9 | 9 | 9 | 0.55 | 1991030 | 1956381 | tier1 | Out-of-frame | 13560 | NA | 0.38825 |
| BLCA | TCGA-BT-A3PK-01A | TCGA-BT-A3PK | ROCK1|GUCA2B | ROCK1 | GUCA2B | 18 | 1 | -1 | 1 | 2 | 8 | 8 | 0.48 | 18603581 | 42620351 | tier3 | In-frame | 14886 | NA | 0 |
| STAD | TCGA-CG-4301-01A | TCGA-CG-4301 | ROCK1|LAMA3 | ROCK1 | LAMA3 | 18 | 18 | -1 | 1 | 3 | 5 | 4 | 0.72 | 18546878 | 21393021 | tier1 | In-frame | 14887 | NA | 0 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | ROCK1|LRIG3 | ROCK1 | LRIG3 | 18 | 12 | -1 | -1 | 23 | 5 | 5 | 0.079 | 18625253 | 59308117 | tier1 | In-frame | 14888 | NA | 0 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | ROCK1|FABP2 | ROCK1 | FABP2 | 18 | 4 | -1 | -1 | 9 | 9 | 9 | 2 | 18690779 | 120241997 | tier1 | Out-of-frame | 14884 | NA | 0 |
| PAAD | TCGA-2J-AAB4-01A | TCGA-2J-AAB4 | ROCK1|CHST9 | ROCK1 | CHST9 | 18 | 18 | -1 | -1 | 5 | 4 | 4 | 0.53 | 18539801 | 24722869 | tier4 | CDS-5UTR | 14882 | NA | 0 |
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