Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | CREBBP|ZNF500 | CREBBP | ZNF500 | 16 | 16 | -1 | -1 | 3 | 4 | 3 | 0.029 | 3929833 | 4803059 | tier4 | In-frame | 4214 | NA | 0.39298 |
| HNSC | TCGA-CR-7374-01A | TCGA-CR-7374 | CREBBP|ATG10 | CREBBP | ATG10 | 16 | 5 | -1 | 1 | 22 | 15 | 14 | 1.2 | 3900298 | 81354314 | tier1 | In-frame | 4200 | NA | 0.38826 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | CREBBP|SRRM2 | CREBBP | SRRM2 | 16 | 16 | -1 | 1 | 22 | 9 | 6 | 0.085 | 3929833 | 2806335 | tier1 | CDS-5UTR | 4212 | NA | 0.38735 |
| LUAD | TCGA-J2-A4AG-01A | TCGA-J2-A4AG | CREBBP|LUC7L | CREBBP | LUC7L | 16 | 16 | -1 | -1 | 2 | 5 | 5 | 0.23 | 3828012 | 243014 | tier3 | Out-of-frame | 4207 | NA | 0.38671 |
| LUSC | TCGA-NC-A5HN-01A | TCGA-NC-A5HN | CREBBP|NAA60 | CREBBP | NAA60 | 16 | 16 | -1 | 1 | 3 | 2 | 2 | 0.084 | 3929833 | 3526222 | tier4 | CDS-5UTR | 4208 | NA | 0.38552 |
| SARC | TCGA-HB-A2OT-01A | TCGA-HB-A2OT | CREBBP|WRAP53 | CREBBP | WRAP53 | 16 | 17 | -1 | 1 | 16 | 4 | 3 | 0.036 | 3860604 | 7591966 | tier1 | CDS-5UTR | 4213 | NA | 0.38552 |
| SKCM | TCGA-ER-A42K-06A | TCGA-ER-A42K | CREBBP|C16orf59 | CREBBP | C16orf59 | 16 | 16 | -1 | 1 | 8 | 3 | 3 | 0.015 | 3788560 | 2514040 | tier1 | Out-of-frame | 4201 | NA | 0 |
| UCEC | TCGA-KP-A3VZ-01A | TCGA-KP-A3VZ | CREBBP|IFT140 | CREBBP | IFT140 | 16 | 16 | -1 | -1 | 15 | 14 | 11 | 0.048 | 3860604 | 1642589 | tier1 | In-frame | 4205 | NA | 0.38782 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | CREBBP|RANBP3 | CREBBP | RANBP3 | 16 | 19 | -1 | -1 | 13 | 7 | 7 | 1.3 | 3900298 | 5941846 | tier1 | In-frame | 4211 | NA | 0.38879 |
| LAML | TCGA-AB-2857-03A | TCGA-AB-2857 | MPO|TYK2 | MPO | TYK2 | 17 | 19 | -1 | -1 | 2 | 15 | 10 | 0.15 | 56347217 | 10491352 | tier3 | 3UTR-5UTR | 10605 | NA | 0.37603 |
| LAML | TCGA-AB-2994-03A | TCGA-AB-2994 | MPO|ANXA1 | MPO | ANXA1 | 17 | 9 | -1 | 1 | 2 | 37 | 23 | 3.2 | 56347217 | 75772570 | tier3 | 3UTR-5UTR | 10602 | non-validated | 0.37556 |
| LAML | TCGA-AB-2991-03A | TCGA-AB-2991 | MPO|STAT6 | MPO | STAT6 | 17 | 12 | -1 | -1 | 2 | 11 | 6 | 0.48 | 56347217 | 57496773 | tier3 | NA | 10604 | non-validated | 0.37471 |
| LAML | TCGA-AB-2846-03A | TCGA-AB-2846 | MPO|FAR1 | MPO | FAR1 | 17 | 11 | -1 | 1 | 2 | 13 | 7 | 8.4 | 56347217 | 13744912 | tier4 | NA | 10603 | NA | 0.35227 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | ABCB4|TMEM169 | ABCB4 | TMEM169 | 7 | 2 | -1 | 1 | 25 | 19 | 17 | 0.5 | 87076350 | 216946870 | tier1 | CDS-5UTR | 49 | NA | 0.34976 |
| SARC | TCGA-SI-AA8C-01A | TCGA-SI-AA8C | MLL5|MAP2K3 | MLL5 | MAP2K3 | 7 | 17 | 1 | 1 | 2 | 14 | 10 | 0.014 | 104715262 | 21215454 | tier3 | In-frame | 10497 | NA | 0.38995 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | MLL5|PTPRZ1 | MLL5 | PTPRZ1 | 7 | 7 | 1 | 1 | 6 | 8 | 8 | 0.17 | 104654982 | 121568210 | tier4 | 5UTR-CDS | 10498 | NA | 0.37534 |
| COAD | TCGA-A6-5660-01A | TCGA-A6-5660 | MLL5|TUFT1 | MLL5 | TUFT1 | 7 | 1 | 1 | 1 | 12 | 9 | 5 | 0.22 | 104748372 | 151542133 | tier1 | In-frame | 10500 | NA | 0.34676 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | MLL5|LHFPL3 | MLL5 | LHFPL3 | 7 | 7 | 1 | 1 | 6 | 13 | 9 | 0.79 | 104654982 | 104546634 | tier1 | 5UTR-CDS | 10492 | validated | 0.34946 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | MLL5|LHFPL3 | MLL5 | LHFPL3 | 7 | 7 | 1 | 1 | 7 | 33 | 28 | 0.79 | 104681470 | 104546634 | tier1 | Out-of-frame | 10494 | NA | 0.34946 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | MLL5|LHFPL3 | MLL5 | LHFPL3 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 0.79 | 104681470 | 104377122 | tier3 | Out-of-frame | 10488 | NA | 0.34946 |
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