Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-E1-A7Z2-01A | TCGA-E1-A7Z2 | ATP2C2|ZNF423 | ATP2C2 | ZNF423 | 16 | 16 | 1 | -1 | 2 | 1 | 1 | 0.049 | 84402320 | 49823457 | tier2 | Out-of-frame | 1734 | NA | 0.36365 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | HIPK2|PARP12 | HIPK2 | PARP12 | 7 | 7 | -1 | -1 | 128 | 81 | 53 | 0.17 | 139415731 | 139726148 | tier1 | In-frame | 7775 | NA | 0.38365 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | HIPK2|PARP12 | HIPK2 | PARP12 | 7 | 7 | -1 | -1 | 185 | 150 | 135 | 0.17 | 139415731 | 139728488 | tier1 | In-frame | 7776 | NA | 0.38365 |
| LUAD | TCGA-78-7154-01A | TCGA-78-7154 | HIPK2|ADCK2 | HIPK2 | ADCK2 | 7 | 7 | -1 | 1 | 10 | 8 | 6 | 0.03 | 139477404 | 140374411 | tier2 | Out-of-frame | 7769 | NA | 0.38283 |
| LUSC | TCGA-39-5011-01A | TCGA-39-5011 | HIPK2|GRM8 | HIPK2 | GRM8 | 7 | 7 | -1 | -1 | 52 | 26 | 25 | 0.18 | 139285163 | 126249552 | tier1 | Out-of-frame | 7773 | NA | 0.38894 |
| BLCA | TCGA-GC-A3YS-01A | TCGA-GC-A3YS | HIPK2|TMEM130 | HIPK2 | TMEM130 | 7 | 7 | -1 | -1 | 8 | 4 | 3 | 0.6 | 139305147 | 98461023 | tier1 | Out-of-frame | 7777 | NA | 0.38323 |
| OV | TCGA-24-1546-01A | TCGA-24-1546 | HIPK2|DENND2A | HIPK2 | DENND2A | 7 | 7 | -1 | -1 | 3 | 1 | 1 | 0.16 | 139477404 | 140287580 | tier2 | Out-of-frame | 7771 | NA | 0.38437 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | HIPK2|MYCBP2 | HIPK2 | MYCBP2 | 7 | 13 | -1 | -1 | 2 | 2 | 2 | 0.19 | 139415731 | 77739526 | tier2 | Out-of-frame | 7774 | NA | 0.38587 |
| SARC | TCGA-VT-A80J-02A | TCGA-VT-A80J | HIPK2|FAM40B | HIPK2 | FAM40B | 7 | 7 | -1 | 1 | 3 | 2 | 1 | 0.065 | 139288827 | 129120626 | tier3 | Out-of-frame | 7772 | NA | 0.38365 |
| SKCM | TCGA-D3-A3C1-06A | TCGA-D3-A3C1 | HIPK2|ARPC1A | HIPK2 | ARPC1A | 7 | 7 | -1 | 1 | 67 | 69 | 66 | 0.26 | 139477404 | 98935804 | tier1 | In-frame | 7770 | NA | 0.38325 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | SLC12A2|MEGF10 | SLC12A2 | MEGF10 | 5 | 5 | 1 | 1 | 14 | 46 | 45 | 1.9 | 127487088 | 126790258 | tier1 | In-frame | 16010 | NA | 0 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | ABCA7|COL5A3 | ABCA7 | COL5A3 | 19 | 19 | 1 | -1 | 46 | 38 | 9 | 0.12 | 1059084 | 10114821 | tier1 | In-frame | 46 | non-validated | 0.36765 |
| BRCA | TCGA-EW-A6S9-01A | TCGA-EW-A6S9 | PMS1|GCG | PMS1 | GCG | 2 | 2 | 1 | -1 | 3 | 3 | 3 | 0.51 | 190670480 | 163004024 | tier1 | Out-of-frame | 13114 | NA | 0.36925 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | PKN2|COL24A1 | PKN2 | COL24A1 | 1 | 1 | 1 | -1 | 2 | 2 | 2 | 0.43 | 89150311 | 86453337 | tier2 | In-frame | 12923 | NA | 0.38651 |
| LUSC | TCGA-21-5784-01A | TCGA-21-5784 | NTN1|STX8 | NTN1 | STX8 | 17 | 17 | 1 | -1 | 2 | 3 | 3 | 0.2 | 9086286 | 9153962 | tier4 | In-frame | 11830 | NA | 0.37356 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | NTN1|RANGAP1 | NTN1 | RANGAP1 | 17 | 22 | 1 | -1 | 20 | 15 | 12 | 0.074 | 8926708 | 41664160 | tier1 | Out-of-frame | 11829 | NA | 0.37297 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | ERBB3|SUOX | ERBB3 | SUOX | 12 | 12 | 1 | 1 | 2 | 2 | 2 | 0.6 | 56494029 | 56395996 | tier4 | CDS-5UTR | 5743 | NA | 0.38485 |
| PRAD | TCGA-KK-A6E4-01A | TCGA-KK-A6E4 | ERBB3|FOXA1 | ERBB3 | FOXA1 | 12 | 14 | 1 | -1 | 2 | 8 | 1 | 0.6 | 56497283 | 38069245 | tier3 | 3UTR-5UTR | 5741 | NA | 0.3874 |
| SKCM | TCGA-D3-A1Q1-06A | TCGA-D3-A1Q1 | ERBB3|RPL30 | ERBB3 | RPL30 | 12 | 8 | 1 | -1 | 3 | 1 | 1 | 0.068 | 56497283 | 99058697 | tier2 | NA | 5742 | non-validated | 0.38638 |
| UCEC | TCGA-AJ-A3I9-01A | TCGA-AJ-A3I9 | ERBB3|COX4I2 | ERBB3 | COX4I2 | 12 | 20 | 1 | 1 | 65 | 77 | 69 | 0.14 | 56474166 | 30231207 | tier1 | In-frame | 5740 | NA | 0.3844 |
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