Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | HDAC7|ACSS3 | HDAC7 | ACSS3 | 12 | 12 | -1 | 1 | 4 | 9 | 7 | 0.7 | 48213550 | 81528595 | tier1 | Out-of-frame | 7627 | NA | 0.37376 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | HDAC7|SRGAP1 | HDAC7 | SRGAP1 | 12 | 12 | -1 | 1 | 443 | 333 | 314 | 0.37 | 48181828 | 64536075 | tier1 | In-frame | 7630 | validated | 0.384 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | HDAC7|VSTM2B | HDAC7 | VSTM2B | 12 | 19 | -1 | 1 | 31 | 24 | 22 | 0.18 | 48213550 | 30018118 | tier1 | In-frame | 7633 | NA | 0.37531 |
| KIRC | TCGA-BP-4986-01A | TCGA-BP-4986 | PRDM6|NIPAL4 | PRDM6 | NIPAL4 | 5 | 5 | 1 | 1 | 6 | 5 | 5 | 4.3 | 122495332 | 156890102 | tier1 | In-frame | 13503 | NA | 0.27805 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | GUCY1B3|PTPRG | GUCY1B3 | PTPRG | 4 | 3 | 1 | 1 | 2 | 3 | 2 | 0.29 | 156681012 | 61975299 | tier4 | Out-of-frame | 7559 | NA | 0.36191 |
| TGCT | TCGA-XE-A8H4-01A | TCGA-XE-A8H4 | TNK2|MFI2 | TNK2 | MFI2 | 3 | 3 | -1 | -1 | 47 | 49 | 46 | 0.64 | 195635356 | 196737665 | tier1 | 5UTR-CDS | 18353 | NA | 0 |
| BLCA | TCGA-DK-A6AV-01A | TCGA-DK-A6AV | CDH3|CHKA | CDH3 | CHKA | 16 | 11 | 1 | -1 | 311 | 175 | 168 | 0.33 | 68718727 | 67836404 | tier1 | In-frame | 3391 | NA | 0.35723 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | CDH3|C16orf70 | CDH3 | C16orf70 | 16 | 16 | 1 | 1 | 7 | 5 | 4 | 0.37 | 68679653 | 67154015 | tier1 | In-frame | 3390 | NA | 0 |
| BRCA | TCGA-A8-A08G-01A | TCGA-A8-A08G | MTMR1|FATE1 | MTMR1 | FATE1 | X | X | 1 | 1 | 7 | 1 | 1 | 0.6 | 149887172 | 150889867 | tier2 | Out-of-frame | 10808 | NA | 0.35976 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | MTMR1|HS1BP3 | MTMR1 | HS1BP3 | X | 2 | 1 | -1 | 44 | 27 | 23 | 0.7 | 149924337 | 20840940 | tier1 | In-frame | 10809 | NA | 0.35467 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | GPC1|XRCC6BP1 | GPC1 | XRCC6BP1 | 2 | 12 | 1 | 1 | 15 | 8 | 7 | 0.16 | 241375501 | 58339411 | tier1 | In-frame | 7325 | NA | 0.36174 |
| LUSC | TCGA-66-2789-01A | TCGA-66-2789 | GPC1|ANKFN1 | GPC1 | ANKFN1 | 2 | 17 | 1 | 1 | 8 | 16 | 16 | 1.1 | 241375501 | 54428127 | tier1 | Out-of-frame | 7323 | validated | 0.35927 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | GPC1|MFN1 | GPC1 | MFN1 | 2 | 3 | 1 | 1 | 2 | 3 | 2 | 2.4 | 241407493 | 179096011 | tier3 | NA | 7324 | NA | 0.36176 |
| SKCM | TCGA-WE-A8K4-01A | TCGA-WE-A8K4 | CASP8|CFLAR | CASP8 | CFLAR | 2 | 2 | 1 | 1 | 117 | 62 | 58 | 0.038 | 202098835 | 201994452 | tier1 | 5UTR-5UTR | 3023 | NA | 0.37673 |
| STAD | TCGA-BR-8361-01A | TCGA-BR-8361 | CASP8|CFLAR | CASP8 | CFLAR | 2 | 2 | 1 | 1 | 2 | 8 | 7 | 0.038 | 202098835 | 201994452 | tier3 | 5UTR-5UTR | 3022 | NA | 0.37673 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | CASP8|ALS2CR12 | CASP8 | ALS2CR12 | 2 | 2 | 1 | -1 | 8 | 10 | 10 | 0.06 | 202131514 | 202195556 | tier1 | In-frame | 3021 | NA | 0.37289 |
| LUAD | TCGA-44-2665-01A | TCGA-44-2665 | CASP8|UBR3 | CASP8 | UBR3 | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 0.84 | 202131514 | 170789422 | tier2 | Out-of-frame | 3025 | validated | 0.37691 |
| PRAD | TCGA-CH-5792-01A | TCGA-CH-5792 | CASP8|NRP2 | CASP8 | NRP2 | 2 | 2 | 1 | 1 | 11 | 9 | 9 | 0.2 | 202098835 | 206547815 | tier1 | 5UTR-5UTR | 3024 | NA | 0.38191 |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | CASP8|VMP1 | CASP8 | VMP1 | 2 | 17 | 1 | 1 | 70 | 45 | 21 | 0.065 | 202150040 | 57915656 | tier1 | In-frame | 3026 | NA | 0.37156 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | ATP2C2|WFDC1 | ATP2C2 | WFDC1 | 16 | 16 | 1 | 1 | 4 | 4 | 4 | 2.3 | 84402320 | 84358025 | tier1 | Out-of-frame | 1733 | NA | 0.33638 |
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