Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-P3-A6T8-01A | TCGA-P3-A6T8 | WNK1|KDM4B | WNK1 | KDM4B | 12 | 19 | 1 | 1 | 3 | 3 | 3 | 0.64 | 863490 | 5016268 | tier1 | CDS-5UTR | 19888 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | WNK1|PIP4K2C | WNK1 | PIP4K2C | 12 | 12 | 1 | 1 | 113 | 61 | 59 | 0.028 | 966415 | 57995309 | tier1 | Out-of-frame | 19890 | NA | 0 |
| LGG | TCGA-DU-7007-01A | TCGA-DU-7007 | WNK1|STK38L | WNK1 | STK38L | 12 | 12 | 1 | 1 | 27 | 16 | 14 | 2 | 863490 | 27455070 | tier1 | Out-of-frame | 19893 | NA | 0 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | WNK1|B4GALNT3 | WNK1 | B4GALNT3 | 12 | 12 | 1 | 1 | 32 | 34 | 33 | 0.048 | 939326 | 657397 | tier1 | In-frame | 19883 | NA | 0 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | WNK1|B4GALNT3 | WNK1 | B4GALNT3 | 12 | 12 | 1 | 1 | 3 | 1 | 1 | 0.048 | 863490 | 644332 | tier4 | Out-of-frame | 19882 | NA | 0 |
| LUAD | TCGA-78-7159-01A | TCGA-78-7159 | WNK1|CCDC77 | WNK1 | CCDC77 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.27 | 863490 | 541032 | tier3 | Out-of-frame | 19884 | NA | 0 |
| LUAD | TCGA-86-8585-01A | TCGA-86-8585 | WNK1|RAD52 | WNK1 | RAD52 | 12 | 12 | 1 | -1 | 13 | 4 | 3 | 0.089 | 998389 | 1042242 | tier1 | CDS-5UTR | 19892 | NA | 0 |
| OV | TCGA-24-0970-01B | TCGA-24-0970 | WNK1|IQSEC3 | WNK1 | IQSEC3 | 12 | 12 | 1 | 1 | 4 | 3 | 3 | 0.067 | 863490 | 247433 | tier1 | CDS-5UTR | 19887 | NA | 0 |
| UCEC | TCGA-D1-A3JQ-01A | TCGA-D1-A3JQ | WNK1|GIPC1 | WNK1 | GIPC1 | 12 | 19 | 1 | -1 | 15 | 16 | 13 | 0.22 | 863490 | 14603724 | tier1 | CDS-5UTR | 19886 | NA | 0 |
| KIRC | TCGA-B0-4698-01A | TCGA-B0-4698 | PTPRU|NOS1AP | PTPRU | NOS1AP | 1 | 1 | 1 | 1 | 3 | 6 | 6 | 0.091 | 29618538 | 162124195 | tier1 | Out-of-frame | 13924 | NA | 0 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | PTPRU|C8orf84 | PTPRU | C8orf84 | 1 | 8 | 1 | -1 | 4 | 4 | 3 | 2.6 | 29563229 | 73984105 | tier1 | In-frame | 13922 | NA | 0 |
| UCEC | TCGA-2E-A9G8-01A | TCGA-2E-A9G8 | PTPRU|KAZN | PTPRU | KAZN | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.34 | 29602268 | 14925479 | tier2 | CDS-5UTR | 13923 | NA | 0 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | COL11A1|ARL5C | COL11A1 | ARL5C | 1 | 17 | -1 | -1 | 3 | 1 | 1 | 0.24 | 103400616 | 37322870 | tier2 | CDS-5UTR | 3987 | NA | 0.36291 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | BCAT1|RECQL | BCAT1 | RECQL | 12 | 12 | -1 | -1 | 3 | 1 | 1 | 1.1 | 25101861 | 21652549 | tier2 | CDS-5UTR | 2008 | non-validated | 0.36233 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | BCAT1|ITPR2 | BCAT1 | ITPR2 | 12 | 12 | -1 | -1 | 7 | 3 | 3 | 0.9 | 25101861 | 26493261 | tier1 | In-frame | 2006 | NA | 0.3665 |
| OV | TCGA-25-1870-01A | TCGA-25-1870 | BCAT1|PRB3 | BCAT1 | PRB3 | 12 | 12 | -1 | -1 | 132 | 37 | 33 | 1.1 | 24995016 | 11421602 | tier1 | In-frame | 2007 | NA | 0.34994 |
| ACC | TCGA-OR-A5JM-01A | TCGA-OR-A5JM | HDAC7|VDR | HDAC7 | VDR | 12 | 12 | -1 | -1 | 16 | 9 | 7 | 0.2 | 48213550 | 48258960 | tier1 | Out-of-frame | 7632 | NA | 0.37963 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | HDAC7|VDR | HDAC7 | VDR | 12 | 12 | -1 | -1 | 4 | 4 | 4 | 0.2 | 48191167 | 48240591 | tier1 | Out-of-frame | 7631 | NA | 0.37963 |
| STAD | TCGA-VQ-A8PJ-01A | TCGA-VQ-A8PJ | HDAC7|COL2A1 | HDAC7 | COL2A1 | 12 | 12 | -1 | -1 | 2 | 13 | 12 | 0.21 | 48213550 | 48393908 | tier2 | In-frame | 7628 | NA | 0.37907 |
| BRCA | TCGA-E2-A14T-01A | TCGA-E2-A14T | HDAC7|IRAK4 | HDAC7 | IRAK4 | 12 | 12 | -1 | 1 | 31 | 7 | 7 | 0.6 | 48185042 | 44161906 | tier1 | CDS-5UTR | 7629 | NA | 0.38264 |
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