Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-EY-A3QX-01A | TCGA-EY-A3QX | LAMC2|NMNAT2 | LAMC2 | NMNAT2 | 1 | 1 | 1 | -1 | 21 | 8 | 8 | 0.085 | 183155566 | 183262928 | tier1 | In-frame | 9213 | NA | 0.35988 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | CDK14|DLD | CDK14 | DLD | 7 | 7 | 1 | 1 | 26 | 11 | 11 | 0.45 | 90233563 | 107542183 | tier1 | Out-of-frame | 3417 | NA | 0.34638 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | CDK14|ORC5 | CDK14 | ORC5 | 7 | 7 | 1 | -1 | 10 | 1 | 1 | 1.3 | 90233563 | 103844682 | tier2 | In-frame | 3419 | NA | 0 |
| MESO | TCGA-TS-A8AF-01A | TCGA-TS-A8AF | CDK14|SAV1 | CDK14 | SAV1 | 7 | 14 | 1 | -1 | 2 | 1 | 1 | 2 | 90675275 | 51111732 | tier3 | In-frame | 3420 | NA | 0.36287 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | CDK14|EBF1 | CDK14 | EBF1 | 7 | 5 | 1 | -1 | 5 | 5 | 5 | 0.28 | 90123744 | 158126150 | tier1 | NA | 3418 | validated | 0.35311 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | CDK14|TFEC | CDK14 | TFEC | 7 | 7 | 1 | -1 | 15 | 3 | 3 | 0.1 | 90528668 | 115624567 | tier1 | CDS-5UTR | 3421 | NA | 0.35667 |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | CAMK2B|KIAA0146 | CAMK2B | KIAA0146 | 7 | 8 | -1 | 1 | 18 | 4 | 3 | 0.18 | 44364956 | 48308936 | tier1 | Out-of-frame | 2920 | NA | 0.38689 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | ATP2B4|ERBB4 | ATP2B4 | ERBB4 | 1 | 2 | 1 | -1 | 16 | 18 | 5 | 0.092 | 203596347 | 212989628 | tier1 | 5UTR-CDS | 1723 | validated | 0.38879 |
| SARC | TCGA-DX-AB32-01A | TCGA-DX-AB32 | ATP2B4|OPTC | ATP2B4 | OPTC | 1 | 1 | 1 | 1 | 5 | 5 | 5 | 0.01 | 203683405 | 203472042 | tier1 | In-frame | 1725 | NA | 0.37526 |
| UCEC | TCGA-EY-A3QX-01A | TCGA-EY-A3QX | ATP2B4|PRELP | ATP2B4 | PRELP | 1 | 1 | 1 | 1 | 11 | 12 | 9 | 1.8 | 203596347 | 203452297 | tier1 | 5UTR-5UTR | 1726 | NA | 0.37757 |
| GBM | TCGA-06-5411-01A | TCGA-06-5411 | ATP2B4|NFASC | ATP2B4 | NFASC | 1 | 1 | 1 | 1 | 3 | 16 | 7 | 0.28 | 203596347 | 204889760 | tier1 | 5UTR-5UTR | 1724 | non-validated | 0.37841 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ATP2B4|RP11-352D3.2 | ATP2B4 | RP11-352D3.2 | 1 | 20 | 1 | -1 | 6 | 59 | 12 | 2.6 | 203596347 | 4053311 | tier1 | 5UTR-CDS | 1727 | NA | 0.37219 |
| UCEC | TCGA-AX-A3G7-01A | TCGA-AX-A3G7 | ATP2B4|TFEB | ATP2B4 | TFEB | 1 | 6 | 1 | -1 | 2 | 10 | 9 | 0.83 | 203696699 | 41658973 | tier2 | CDS-5UTR | 1728 | NA | 0.37653 |
| STAD | TCGA-KB-A93J-01A | TCGA-KB-A93J | TBXAS1|TOMM7 | TBXAS1 | TOMM7 | 7 | 7 | 1 | -1 | 5 | 15 | 14 | 100 | 139529278 | 22857667 | tier1 | Out-of-frame | 17568 | NA | 0 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | CDK17|USP30 | CDK17 | USP30 | 12 | 12 | -1 | 1 | 2 | 2 | 2 | 0.16 | 96704830 | 109505329 | tier2 | Out-of-frame | 3423 | NA | 0.34722 |
| STAD | TCGA-BR-8679-01A | TCGA-BR-8679 | CDK17|C12orf63 | CDK17 | C12orf63 | 12 | 12 | -1 | 1 | 168 | 454 | 432 | 0.034 | 96728497 | 96906764 | tier1 | In-frame | 3422 | NA | 0 |
| PAAD | TCGA-3A-A9I9-01A | TCGA-3A-A9I9 | STYK1|GPR162 | STYK1 | GPR162 | 12 | 12 | -1 | 1 | 10 | 13 | 12 | 3.6 | 10774475 | 6934649 | tier1 | Out-of-frame | 17156 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | WNK1|KDM5A | WNK1 | KDM5A | 12 | 12 | 1 | -1 | 14 | 9 | 2 | 0.36 | 939326 | 432947 | tier1 | In-frame | 19889 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | WNK1|PRMT8 | WNK1 | PRMT8 | 12 | 12 | 1 | 1 | 12 | 13 | 9 | 0.27 | 971436 | 3649772 | tier1 | In-frame | 19891 | NA | 0 |
| LUSC | TCGA-98-A53I-01A | TCGA-98-A53I | WNK1|DUSP16 | WNK1 | DUSP16 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 1.4 | 863490 | 12640121 | tier1 | In-frame | 19885 | NA | 0 |
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