Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-XF-A9SP-01A | TCGA-XF-A9SP | TAB2|UST | TAB2 | UST | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 2.4 | 149700654 | 149394969 | tier3 | In-frame | 17291 | NA | 0 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | TAB2|C6orf162 | TAB2 | C6orf162 | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 0.11 | 149663969 | 88046727 | tier4 | 5UTR-5UTR | 17288 | NA | 0 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | TAB2|PAX7 | TAB2 | PAX7 | 6 | 1 | 1 | 1 | 4 | 7 | 7 | 0.9 | 149639151 | 19062126 | tier1 | 5UTR-CDS | 17290 | NA | 0 |
| BLCA | TCGA-FD-A3NA-01A | TCGA-FD-A3NA | EIF2AK2|CEBPZ | EIF2AK2 | CEBPZ | 2 | 2 | -1 | -1 | 7 | 5 | 5 | 0.36 | 37362627 | 37430151 | tier1 | Out-of-frame | 5423 | NA | 0.38388 |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | EIF2AK2|CEBPZ | EIF2AK2 | CEBPZ | 2 | 2 | -1 | -1 | 88 | 114 | 109 | 0.36 | 37349649 | 37429046 | tier1 | Out-of-frame | 5422 | non-validated | 0.38388 |
| BRCA | TCGA-D8-A142-01A | TCGA-D8-A142 | EIF2AK2|FAM82A1 | EIF2AK2 | FAM82A1 | 2 | 2 | -1 | 1 | 32 | 33 | 27 | 0.23 | 37362627 | 38216684 | tier1 | In-frame | 5424 | NA | 0.38198 |
| READ | TCGA-DC-6154-01A | TCGA-DC-6154 | MLL3|LMTK3 | MLL3 | LMTK3 | 7 | 19 | -1 | -1 | 7 | 8 | 6 | 0.02 | 151845118 | 48997366 | tier1 | In-frame | 10477 | NA | 0.37137 |
| BRCA | TCGA-BH-A0DI-01A | TCGA-BH-A0DI | MLL3|CNTNAP2 | MLL3 | CNTNAP2 | 7 | 7 | -1 | 1 | 4 | 4 | 4 | 0.5 | 152027686 | 146740999 | tier1 | Out-of-frame | 10468 | NA | 0.37603 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | MLL3|CNTNAP2 | MLL3 | CNTNAP2 | 7 | 7 | -1 | 1 | 17 | 13 | 10 | 0.5 | 152132711 | 146471363 | tier1 | Out-of-frame | 10469 | NA | 0.37603 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | MLL3|SND1 | MLL3 | SND1 | 7 | 7 | -1 | 1 | 2 | 39 | 33 | 2.1 | 152132711 | 127447538 | tier2 | Out-of-frame | 10479 | NA | 0.37607 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | MLL3|AUTS2 | MLL3 | AUTS2 | 7 | 7 | -1 | 1 | 21 | 27 | 26 | 0.31 | 152132711 | 69900738 | tier1 | Out-of-frame | 10465 | NA | 0.36789 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | MLL3|CALN1 | MLL3 | CALN1 | 7 | 7 | -1 | -1 | 15 | 3 | 3 | 0.14 | 151859202 | 71571279 | tier2 | Out-of-frame | 10466 | validated | 0.37014 |
| BRCA | TCGA-AO-A126-01A | TCGA-AO-A126 | MLL3|CLIP2 | MLL3 | CLIP2 | 7 | 7 | -1 | 1 | 10 | 30 | 25 | 0.97 | 151871216 | 73811404 | tier1 | In-frame | 10467 | NA | 0.37325 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | MLL3|DNAH11 | MLL3 | DNAH11 | 7 | 7 | -1 | 1 | 47 | 27 | 27 | 0.2 | 152007051 | 21856085 | tier1 | In-frame | 10470 | NA | 0.36892 |
| HNSC | TCGA-CV-7440-01A | TCGA-CV-7440 | MLL3|GTF2IRD1 | MLL3 | GTF2IRD1 | 7 | 7 | -1 | 1 | 8 | 10 | 9 | 0.084 | 151902191 | 74004180 | tier1 | In-frame | 10474 | NA | 0.37078 |
| LUAD | TCGA-97-8179-01A | TCGA-97-8179 | MLL3|SYTL5 | MLL3 | SYTL5 | 7 | X | -1 | 1 | 4 | 9 | 7 | 0.02 | 152132711 | 37913466 | tier1 | In-frame | 10480 | NA | 0.3732 |
| LUSC | TCGA-NC-A5HF-01A | TCGA-NC-A5HF | MLL3|AGK | MLL3 | AGK | 7 | 7 | -1 | 1 | 3 | 1 | 1 | 0.67 | 151864231 | 141292946 | tier3 | Out-of-frame | 10464 | NA | 0.36992 |
| OV | TCGA-61-1917-01A | TCGA-61-1917 | MLL3|GALNTL5 | MLL3 | GALNTL5 | 7 | 7 | -1 | 1 | 2 | 5 | 5 | 0.3 | 152132711 | 151668030 | tier2 | Out-of-frame | 10472 | NA | 0.36688 |
| PRAD | TCGA-YL-A8SP-01B | TCGA-YL-A8SP | MLL3|FUT9 | MLL3 | FUT9 | 7 | 6 | -1 | 1 | 12 | 9 | 9 | 0.14 | 151949024 | 96651024 | tier1 | CDS-5UTR | 10471 | NA | 0.36754 |
| PRAD | TCGA-2A-A8VT-01A | TCGA-2A-A8VT | MLL3|NDUFAF4 | MLL3 | NDUFAF4 | 7 | 6 | -1 | -1 | 7 | 8 | 7 | 0.12 | 151854846 | 97344723 | tier1 | Out-of-frame | 10478 | NA | 0.36604 |
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