Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 23 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A8BV-01A | TCGA-DX-A8BV | ARID4B|KLHL12 | ARID4B | KLHL12 | 1 | 1 | -1 | -1 | 6 | 4 | 4 | 0.73 | 235490229 | 202894335 | tier1 | CDS-5UTR | 1381 | NA | 0.38115 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | ARID4B|NTPCR | ARID4B | NTPCR | 1 | 1 | -1 | 1 | 76 | 31 | 28 | 0.11 | 235409735 | 233113909 | tier1 | Out-of-frame | 1382 | NA | 0.35354 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | ARID4B|B3GALNT2 | ARID4B | B3GALNT2 | 1 | 1 | -1 | -1 | 34 | 14 | 8 | 0.3 | 235357328 | 235613655 | tier1 | Out-of-frame | 1378 | NA | 0.36073 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | ARID4B|PCNXL2 | ARID4B | PCNXL2 | 1 | 1 | -1 | -1 | 77 | 74 | 71 | 0.035 | 235420475 | 233314921 | tier1 | In-frame | 1383 | NA | 0.35671 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | ARID4B|SOX5 | ARID4B | SOX5 | 1 | 12 | -1 | -1 | 6 | 2 | 2 | 0.01 | 235377084 | 24048958 | tier1 | In-frame | 1385 | NA | 0.36325 |
| OV | TCGA-13-1512-01A | TCGA-13-1512 | ARID4B|GNPAT | ARID4B | GNPAT | 1 | 1 | -1 | 1 | 2 | 10 | 10 | 0.047 | 235490229 | 231398469 | tier2 | In-frame | 1379 | NA | 0.36381 |
| SKCM | TCGA-QB-AA9O-06A | TCGA-QB-AA9O | ARID4B|IGFN1 | ARID4B | IGFN1 | 1 | 1 | -1 | 1 | 32 | 20 | 19 | 0.06 | 235491084 | 201194952 | tier1 | 5UTR-CDS | 1380 | NA | 0.37225 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | ARID4B|SCCPDH | ARID4B | SCCPDH | 1 | 1 | -1 | 1 | 5 | 3 | 3 | 0.54 | 235357328 | 246927548 | tier1 | Out-of-frame | 1384 | NA | 0.36283 |
| PRAD | TCGA-KC-A7F5-01A | TCGA-KC-A7F5 | OPN3|SLC39A11 | OPN3 | SLC39A11 | 1 | 17 | -1 | -1 | 6 | 4 | 2 | 0.9 | 241803184 | 70944014 | tier1 | Out-of-frame | 12040 | NA | 0.34861 |
| BRCA | TCGA-AN-A0FT-01A | TCGA-AN-A0FT | HHAT|CD34 | HHAT | CD34 | 1 | 1 | 1 | -1 | 3 | 2 | 2 | 0.37 | 210637999 | 208061268 | tier1 | Out-of-frame | 7739 | NA | 0.36128 |
| BRCA | TCGA-S3-A6ZG-01A | TCGA-S3-A6ZG | HHAT|RFWD2 | HHAT | RFWD2 | 1 | 1 | 1 | -1 | 7 | 16 | 16 | 1.4 | 210797014 | 175916375 | tier1 | Out-of-frame | 7742 | NA | 0.36198 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | HHAT|SERTAD4 | HHAT | SERTAD4 | 1 | 1 | 1 | 1 | 9 | 6 | 6 | 0.67 | 210578023 | 210411289 | tier1 | CDS-5UTR | 7743 | NA | 0.34716 |
| LUSC | TCGA-34-5236-01A | TCGA-34-5236 | HHAT|PPPDE1 | HHAT | PPPDE1 | 1 | 1 | 1 | 1 | 8 | 7 | 7 | 6.6 | 210637999 | 244868858 | tier1 | Out-of-frame | 7741 | NA | 0.3321 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | HHAT|KIF5B | HHAT | KIF5B | 1 | 10 | 1 | -1 | 3 | 2 | 2 | 2.7 | 210591669 | 32329385 | tier1 | In-frame | 7740 | NA | 0.36358 |
| COAD | TCGA-AD-6965-01A | TCGA-AD-6965 | ATP9A|WFDC8 | ATP9A | WFDC8 | 20 | 20 | -1 | -1 | 7 | 5 | 5 | 0.36 | 50286536 | 44190858 | tier1 | Out-of-frame | 1777 | NA | 0.34989 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | ATP9A|EPB41L1 | ATP9A | EPB41L1 | 20 | 20 | -1 | 1 | 2 | 3 | 2 | 0.057 | 50329505 | 34763473 | tier4 | CDS-5UTR | 1774 | NA | 0.36888 |
| LUAD | TCGA-86-8280-01A | TCGA-86-8280 | ATP9A|MACROD2 | ATP9A | MACROD2 | 20 | 20 | -1 | 1 | 6 | 4 | 4 | 1.4 | 50255882 | 15843390 | tier4 | In-frame | 1775 | NA | 0.35185 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | ATP9A|TRPC4AP | ATP9A | TRPC4AP | 20 | 20 | -1 | -1 | 4 | 3 | 3 | 0.27 | 50384841 | 33623111 | tier1 | Out-of-frame | 1776 | NA | 0.36806 |
| UCS | TCGA-NF-A5CP-01A | TCGA-NF-A5CP | ATP9A|ZFP64 | ATP9A | ZFP64 | 20 | 20 | -1 | -1 | 9 | 2 | 1 | 0.94 | 50342358 | 50715126 | tier2 | Out-of-frame | 1778 | NA | 0.37106 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | TAB2|KCNU1 | TAB2 | KCNU1 | 6 | 8 | 1 | 1 | 5 | 3 | 3 | 2.1 | 149663969 | 36721922 | tier1 | 5UTR-CDS | 17289 | NA | 0 |
|
Showing page 23 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.