Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | PIK3CB|ESYT3 | PIK3CB | ESYT3 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 2.6 | 138400809 | 138176410 | tier3 | Out-of-frame | 12835 | NA | 0.37354 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PIK3CB|HHLA2 | PIK3CB | HHLA2 | 3 | 3 | -1 | 1 | 93 | 72 | 64 | 1.5 | 138478015 | 108070635 | tier1 | CDS-5UTR | 12837 | NA | 0.37703 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PIK3CB|SEMA5B | PIK3CB | SEMA5B | 3 | 3 | -1 | -1 | 32 | 26 | 26 | 0.23 | 138452203 | 122667556 | tier4 | Out-of-frame | 12841 | NA | 0.3781 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | PIK3CB|BFSP2 | PIK3CB | BFSP2 | 3 | 3 | -1 | 1 | 128 | 106 | 96 | 0.9 | 138452203 | 133185672 | tier1 | In-frame | 12833 | non-validated | 0.37755 |
| BRCA | TCGA-AR-A24V-01A | TCGA-AR-A24V | FSTL4|SLIT3 | FSTL4 | SLIT3 | 5 | 5 | -1 | -1 | 9 | 5 | 5 | 0.54 | 132537625 | 168114121 | tier1 | In-frame | 6813 | NA | 0.35753 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | FSTL4|SLC22A4 | FSTL4 | SLC22A4 | 5 | 5 | -1 | 1 | 2 | 3 | 3 | 5.2 | 132902877 | 131679453 | tier3 | Out-of-frame | 6812 | NA | 0.35942 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | LAMA3|PSMA8 | LAMA3 | PSMA8 | 18 | 18 | 1 | 1 | 3 | 1 | 1 | 2.4 | 21294036 | 23759032 | tier4 | In-frame | 9191 | NA | 0.36348 |
| LUAD | TCGA-69-8453-01A | TCGA-69-8453 | LAMA3|CABLES1 | LAMA3 | CABLES1 | 18 | 18 | 1 | 1 | 2 | 3 | 3 | 0.013 | 21269941 | 20768802 | tier3 | Out-of-frame | 9186 | NA | 0.3667 |
| LUAD | TCGA-05-5425-01A | TCGA-05-5425 | LAMA3|FAM59A | LAMA3 | FAM59A | 18 | 18 | 1 | -1 | 145 | 112 | 90 | 0.22 | 21462009 | 29850346 | tier1 | Out-of-frame | 9188 | NA | 0.36128 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | LAMA3|GNAL | LAMA3 | GNAL | 18 | 18 | 1 | 1 | 4 | 1 | 1 | 2.3 | 21294036 | 11753627 | tier2 | Out-of-frame | 9189 | NA | 0.36814 |
| LUAD | TCGA-75-6214-01A | TCGA-75-6214 | LAMA3|ZNF521 | LAMA3 | ZNF521 | 18 | 18 | 1 | -1 | 193 | 178 | 166 | 1.9 | 21529888 | 22807661 | tier1 | In-frame | 9192 | NA | 0.37112 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | LAMA3|C18orf8 | LAMA3 | C18orf8 | 18 | 18 | 1 | 1 | 4 | 3 | 3 | 0.23 | 21294036 | 21095820 | tier1 | In-frame | 9185 | NA | 0 |
| PRAD | TCGA-G9-6329-01A | TCGA-G9-6329 | LAMA3|COX8C | LAMA3 | COX8C | 18 | 14 | 1 | 1 | 9 | 4 | 3 | 0.68 | 21427632 | 93814374 | tier1 | Out-of-frame | 9187 | NA | 0.36025 |
| STAD | TCGA-IN-A7NU-01A | TCGA-IN-A7NU | LAMA3|OSBPL1A | LAMA3 | OSBPL1A | 18 | 18 | 1 | -1 | 6 | 56 | 37 | 1.6 | 21513899 | 21892070 | tier1 | In-frame | 9190 | NA | 0.36644 |
| COAD | TCGA-DM-A0XF-01A | TCGA-DM-A0XF | KCNQ1|SCT | KCNQ1 | SCT | 11 | 11 | 1 | -1 | 182 | 201 | 175 | 0.14 | 2549248 | 626530 | tier1 | Out-of-frame | 8602 | NA | 0.36096 |
| READ | TCGA-DC-6160-01A | TCGA-DC-6160 | KCNQ1|MMP26 | KCNQ1 | MMP26 | 11 | 11 | 1 | 1 | 3 | 2 | 1 | 0.13 | 2610084 | 4788500 | tier2 | CDS-5UTR | 8601 | NA | 0.36288 |
| BRCA | TCGA-D8-A1JG-01B | TCGA-D8-A1JG | KCNQ1|TSPAN32 | KCNQ1 | TSPAN32 | 11 | 11 | 1 | 1 | 16 | 8 | 6 | 0.012 | 2549248 | 2324074 | tier1 | In-frame | 8603 | NA | 0.36029 |
| COAD | TCGA-D5-5538-01A | TCGA-D5-5538 | KCNQ1|GALNTL6 | KCNQ1 | GALNTL6 | 11 | 4 | 1 | 1 | 29 | 19 | 18 | 0.44 | 2799267 | 173930329 | tier1 | In-frame | 8599 | NA | 0.3613 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | KCNQ1|B4GALNT4 | KCNQ1 | B4GALNT4 | 11 | 11 | 1 | 1 | 4 | 2 | 2 | 0.11 | 2610084 | 372662 | tier1 | Out-of-frame | 8598 | NA | 0.35967 |
| UCS | TCGA-NF-A4WX-01A | TCGA-NF-A4WX | KCNQ1|LSP1 | KCNQ1 | LSP1 | 11 | 11 | 1 | 1 | 10 | 11 | 11 | 0.084 | 2466714 | 1901317 | tier1 | In-frame | 8600 | NA | 0.36729 |
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