Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5496-01A | TCGA-EJ-5496 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 4 | 2 | 2 | 0.084 | 33246273 | 32631567 | tier1 | In-frame | 9647 | NA | 0.37895 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | LTBP1|YIPF4 | LTBP1 | YIPF4 | 2 | 2 | 1 | 1 | 9 | 111 | 103 | 1.6 | 33413918 | 32526451 | tier2 | In-frame | 9654 | NA | 0.37124 |
| UCEC | TCGA-AJ-A3I9-01A | TCGA-AJ-A3I9 | LTBP1|TTC27 | LTBP1 | TTC27 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 2.3 | 33540336 | 32855590 | tier3 | In-frame | 9651 | NA | 0.37538 |
| BRCA | TCGA-D8-A1XQ-01A | TCGA-D8-A1XQ | ELN|FADS2 | ELN | FADS2 | 7 | 11 | 1 | 1 | 2 | 1 | 1 | 0.011 | 73484007 | 61588853 | tier3 | 3UTR-CDS | 5528 | NA | 0.35825 |
| BRCA | TCGA-AO-A0J3-01A | TCGA-AO-A0J3 | ELN|METTL2B | ELN | METTL2B | 7 | 7 | 1 | 1 | 6 | 3 | 3 | 2.7 | 73442599 | 128133858 | tier1 | Out-of-frame | 5530 | NA | 0.36034 |
| TGCT | TCGA-XE-AANI-01A | TCGA-XE-AANI | ELN|IQCE | ELN | IQCE | 7 | 7 | 1 | 1 | 2 | 18 | 17 | 0.022 | 73484007 | 2641075 | tier4 | 3UTR-CDS | 5529 | NA | 0.36206 |
| UCEC | TCGA-AJ-A3TW-01A | TCGA-AJ-A3TW | DKK3|PPFIA1 | DKK3 | PPFIA1 | 11 | 11 | -1 | 1 | 2 | 1 | 1 | 0.49 | 12023847 | 70194295 | tier2 | Out-of-frame | 4863 | NA | 0.36427 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | SLC4A8|MGAT4C | SLC4A8 | MGAT4C | 12 | 12 | 1 | -1 | 2 | 3 | 3 | 1.7 | 51865316 | 86443501 | tier2 | CDS-5UTR | 16278 | NA | 0 |
| LGG | TCGA-HT-A617-01A | TCGA-HT-A617 | LAMC3|EIF2B3 | LAMC3 | EIF2B3 | 9 | 1 | 1 | -1 | 2 | 1 | 1 | 1.3 | 133928352 | 45363116 | tier2 | Out-of-frame | 9214 | NA | 0.35912 |
| PRAD | TCGA-TK-A8OK-01A | TCGA-TK-A8OK | LAMC3|NPHP3 | LAMC3 | NPHP3 | 9 | 3 | 1 | -1 | 4 | 2 | 1 | 4 | 133917122 | 132423215 | tier4 | Out-of-frame | 9215 | NA | 0.35733 |
| CESC | TCGA-JX-A3Q8-01A | TCGA-JX-A3Q8 | MAPK9|ZFP2 | MAPK9 | ZFP2 | 5 | 5 | -1 | 1 | 7 | 3 | 3 | 1.5 | 179706796 | 178358238 | tier1 | CDS-5UTR | 9956 | NA | 0.38954 |
| OV | TCGA-25-1314-01A | TCGA-25-1314 | MAPK9|UBL7 | MAPK9 | UBL7 | 5 | 15 | -1 | -1 | 13 | 21 | 17 | 0.85 | 179718848 | 74749012 | tier1 | 5UTR-CDS | 9955 | NA | 0.38733 |
| PRAD | TCGA-EJ-7789-01A | TCGA-EJ-7789 | MAPK9|DGKB | MAPK9 | DGKB | 5 | 7 | -1 | -1 | 42 | 33 | 30 | 1.2 | 179691781 | 14661119 | tier1 | Out-of-frame | 9954 | NA | 0.38604 |
| OV | TCGA-24-2024-01A | TCGA-24-2024 | COL23A1|FAM193B | COL23A1 | FAM193B | 5 | 5 | -1 | -1 | 4 | 5 | 3 | 0.5 | 177987683 | 176947182 | tier1 | CDS-3UTR | 4007 | validated | 0.35431 |
| BRCA | TCGA-EW-A1OZ-01A | TCGA-EW-A1OZ | PIK3CB|TSPO | PIK3CB | TSPO | 3 | 22 | -1 | 1 | 66 | 94 | 79 | 0.16 | 138515305 | 43555216 | tier1 | 5UTR-5UTR | 12842 | NA | 0.37788 |
| BRCA | TCGA-EW-A3E8-01B | TCGA-EW-A3E8 | PIK3CB|PCCB | PIK3CB | PCCB | 3 | 3 | -1 | 1 | 32 | 44 | 40 | 0.083 | 138515305 | 136002679 | tier1 | 5UTR-CDS | 12839 | NA | 0.3749 |
| KIRC | TCGA-B8-5163-01A | TCGA-B8-5163 | PIK3CB|KCNAB1 | PIK3CB | KCNAB1 | 3 | 3 | -1 | 1 | 27 | 9 | 7 | 0.68 | 138413628 | 156175242 | tier1 | Out-of-frame | 12838 | NA | 0.37779 |
| LUAD | TCGA-73-A9RS-01A | TCGA-73-A9RS | PIK3CB|GRM7 | PIK3CB | GRM7 | 3 | 3 | -1 | 1 | 7 | 7 | 7 | 0.7 | 138474596 | 7620109 | tier1 | Out-of-frame | 12836 | NA | 0.38184 |
| BRCA | TCGA-EW-A3E8-01B | TCGA-EW-A3E8 | PIK3CB|COPB2 | PIK3CB | COPB2 | 3 | 3 | -1 | -1 | 3 | 6 | 4 | 0.53 | 138478015 | 139102277 | tier1 | In-frame | 12834 | NA | 0.38036 |
| BRCA | TCGA-AQ-A7U7-01A | TCGA-AQ-A7U7 | PIK3CB|RASA2 | PIK3CB | RASA2 | 3 | 3 | -1 | 1 | 5 | 1 | 1 | 0.93 | 138383878 | 141235170 | tier3 | In-frame | 12840 | NA | 0.38042 |
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