Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A1ZT-06A | TCGA-FS-A1ZT | RSF1|ARRB1 | RSF1 | ARRB1 | 11 | 11 | -1 | -1 | 9 | 12 | 12 | 0.39 | 77383087 | 75001083 | tier1 | Out-of-frame | 15143 | NA | 0 |
| SKCM | TCGA-EB-A57M-01A | TCGA-EB-A57M | RSF1|INTS4 | RSF1 | INTS4 | 11 | 11 | -1 | -1 | 13 | 3 | 3 | 0.37 | 77531574 | 77594998 | tier1 | Out-of-frame | 15146 | NA | 0 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | RSF1|NARS2 | RSF1 | NARS2 | 11 | 11 | -1 | -1 | 32 | 18 | 17 | 0.3 | 77531574 | 78154804 | tier1 | Out-of-frame | 15149 | NA | 0 |
| LUSC | TCGA-18-3414-01A | TCGA-18-3414 | KITLG|TNNC1 | KITLG | TNNC1 | 12 | 3 | -1 | -1 | 5 | 6 | 6 | 0.52 | 88974041 | 52486268 | tier1 | Out-of-frame | 9034 | NA | 0.372 |
| LUSC | TCGA-22-1017-01A | TCGA-22-1017 | KITLG|CCDC6 | KITLG | CCDC6 | 12 | 10 | -1 | -1 | 12 | 4 | 4 | 1.2 | 88974041 | 61612460 | tier1 | In-frame | 9031 | NA | 0.37265 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | KITLG|RP11-366L20.2 | KITLG | RP11-366L20.2 | 12 | 12 | -1 | -1 | 4 | 3 | 2 | 0.023 | 88898936 | 66245432 | tier1 | 3UTR-CDS | 9032 | NA | 0.36371 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | KITLG|ST8SIA6 | KITLG | ST8SIA6 | 12 | 10 | -1 | -1 | 10 | 14 | 11 | 0.48 | 88974041 | 17373551 | tier1 | Out-of-frame | 9033 | NA | 0.3642 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | H6PD|CRISP3 | H6PD | CRISP3 | 1 | 6 | 1 | -1 | 2 | 2 | 1 | 0.2 | 9331396 | 49712150 | tier3 | 3UTR-5UTR | 7578 | NA | 0.34364 |
| BLCA | TCGA-G2-AA3D-01A | TCGA-G2-AA3D | H6PD|CA6 | H6PD | CA6 | 1 | 1 | 1 | 1 | 8 | 7 | 7 | 0.01 | 9307142 | 9027718 | tier1 | In-frame | 7577 | NA | 0.35322 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | LTBP1|UCMA | LTBP1 | UCMA | 2 | 10 | 1 | -1 | 4 | 3 | 2 | 2.2 | 33174012 | 13264200 | tier1 | In-frame | 9653 | validated | 0.3686 |
| BLCA | TCGA-DK-A3IK-01A | TCGA-DK-A3IK | LTBP1|PLB1 | LTBP1 | PLB1 | 2 | 2 | 1 | 1 | 10 | 9 | 8 | 0.008 | 33413918 | 28771727 | tier1 | In-frame | 9650 | NA | 0.37289 |
| BRCA | TCGA-AR-A24N-01A | TCGA-AR-A24N | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 37 | 8 | 7 | 0.084 | 33246273 | 32631567 | tier1 | In-frame | 9646 | NA | 0.37895 |
| BRCA | TCGA-AN-A0XN-01A | TCGA-AN-A0XN | LTBP1|CDH23 | LTBP1 | CDH23 | 2 | 10 | 1 | 1 | 4 | 4 | 1 | 0.72 | 33447218 | 73269839 | tier3 | In-frame | 9649 | NA | 0.37387 |
| BRCA | TCGA-BH-A0RX-01A | TCGA-BH-A0RX | LTBP1|TTC27 | LTBP1 | TTC27 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 2.3 | 33413918 | 32983359 | tier4 | In-frame | 9652 | NA | 0.37538 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | LTBP1|ZDHHC2 | LTBP1 | ZDHHC2 | 2 | 8 | 1 | 1 | 3 | 4 | 4 | 1.4 | 33540336 | 17042298 | tier1 | In-frame | 9655 | NA | 0.36946 |
| LAML | TCGA-AB-2931-03A | TCGA-AB-2931 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 8 | 10 | 10 | 0.084 | 33246273 | 32631567 | tier1 | In-frame | 9645 | NA | 0.37895 |
| LUSC | TCGA-22-5491-01A | TCGA-22-5491 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 0.084 | 33246273 | 32631567 | tier3 | In-frame | 9642 | NA | 0.37895 |
| LUSC | TCGA-58-8390-01A | TCGA-58-8390 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 2 | 4 | 1 | 0.084 | 33624424 | 32820101 | tier4 | 3UTR-CDS | 9643 | NA | 0.37895 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 6 | 11 | 7 | 0.084 | 33624426 | 32820101 | tier1 | 3UTR-CDS | 9644 | NA | 0.37895 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | LTBP1|BIRC6 | LTBP1 | BIRC6 | 2 | 2 | 1 | 1 | 4 | 3 | 1 | 0.084 | 33447218 | 32770710 | tier4 | In-frame | 9648 | NA | 0.37895 |
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