Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-DD-A73C-01A | TCGA-DD-A73C | SLC7A2|TERT | SLC7A2 | TERT | 8 | 5 | 1 | -1 | 20 | 19 | 18 | 1.1 | 17359811 | 1282739 | tier1 | 5UTR-CDS | 16290 | NA | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | AK2|MKL1 | AK2 | MKL1 | 1 | 22 | -1 | -1 | 4 | 27 | 26 | 0.047 | 33502337 | 40859290 | tier1 | CDS-5UTR | 712 | NA | 0.35974 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | KDM1A|EPHB2 | KDM1A | EPHB2 | 1 | 1 | 1 | 1 | 44 | 49 | 47 | 0.14 | 23357127 | 23208852 | tier1 | In-frame | 8624 | NA | 0.38174 |
| STAD | TCGA-VQ-A8DV-01A | TCGA-VQ-A8DV | KDM1A|TMEM115 | KDM1A | TMEM115 | 1 | 3 | 1 | -1 | 5 | 27 | 26 | 0.83 | 23346440 | 50392978 | tier1 | Out-of-frame | 8625 | NA | 0.33599 |
| BRCA | TCGA-A8-A08R-01A | TCGA-A8-A08R | SLC25A13|STK31 | SLC25A13 | STK31 | 7 | 7 | -1 | 1 | 7 | 3 | 3 | 5 | 95906508 | 23792336 | tier1 | Out-of-frame | 16091 | NA | 0 |
| LUSC | TCGA-77-8144-01A | TCGA-77-8144 | SLC25A13|MAGI2 | SLC25A13 | MAGI2 | 7 | 7 | -1 | -1 | 6 | 9 | 8 | 0.018 | 95814239 | 77998530 | tier1 | In-frame | 16089 | NA | 0 |
| PCPG | TCGA-QT-A5XO-01A | TCGA-QT-A5XO | SLC25A13|SH2D3C | SLC25A13 | SH2D3C | 7 | 9 | -1 | -1 | 7 | 2 | 2 | 0.029 | 95813589 | 130504238 | tier1 | Out-of-frame | 16090 | NA | 0 |
| READ | TCGA-EI-6510-01A | TCGA-EI-6510 | SLC25A13|CD2AP | SLC25A13 | CD2AP | 7 | 6 | -1 | 1 | 14 | 7 | 6 | 0.014 | 95813589 | 47512342 | tier1 | In-frame | 16086 | NA | 0 |
| SARC | TCGA-HS-A5N9-01A | TCGA-HS-A5N9 | SLC25A13|GTPBP10 | SLC25A13 | GTPBP10 | 7 | 7 | -1 | 1 | 5 | 4 | 4 | 3 | 95951254 | 89982130 | tier1 | In-frame | 16087 | NA | 0 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | SLC25A13|C7orf55 | SLC25A13 | C7orf55 | 7 | 7 | -1 | 1 | 54 | 8 | 7 | 0.48 | 95926210 | 139030247 | tier1 | In-frame | 16085 | NA | 0 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | SLC25A13|LUC7L2 | SLC25A13 | LUC7L2 | 7 | 7 | -1 | 1 | 53 | 62 | 56 | 0.3 | 95926210 | 139030247 | tier1 | In-frame | 16088 | NA | 0 |
| PRAD | TCGA-V1-A9OX-01A | TCGA-V1-A9OX | AC004410.1|DOT1L | AC004410.1 | DOT1L | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.007 | 2339207 | 2225387 | tier3 | In-frame | 140 | NA | 0.33637 |
| LUSC | TCGA-22-4593-01A | TCGA-22-4593 | PRKAR2B|HMCN1 | PRKAR2B | HMCN1 | 7 | 1 | 1 | 1 | 2 | 2 | 2 | 0.7 | 106710761 | 185815158 | tier2 | In-frame | 13537 | NA | 0.36852 |
| LAML | TCGA-AB-2910-03A | TCGA-AB-2910 | CREBBP|KAT6A | CREBBP | KAT6A | 16 | 8 | -1 | -1 | 13 | 12 | 12 | 0.024 | 3929833 | 41792385 | tier1 | In-frame | 4206 | NA | 0.38552 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | CREBBP|PRSS33 | CREBBP | PRSS33 | 16 | 16 | -1 | -1 | 104 | 65 | 51 | 0.053 | 3929833 | 2836122 | tier1 | In-frame | 4210 | NA | 0.38881 |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | CREBBP|GLYR1 | CREBBP | GLYR1 | 16 | 16 | -1 | -1 | 3 | 2 | 2 | 0.42 | 3900298 | 4882913 | tier1 | Out-of-frame | 4203 | NA | 0.38552 |
| BLCA | TCGA-UY-A9PB-01A | TCGA-UY-A9PB | CREBBP|ADCY9 | CREBBP | ADCY9 | 16 | 16 | -1 | -1 | 4 | 2 | 2 | 0.07 | 3929833 | 4016967 | tier1 | Out-of-frame | 4199 | NA | 0.38677 |
| LUSC | TCGA-60-2714-01A | TCGA-60-2714 | CREBBP|HCN1 | CREBBP | HCN1 | 16 | 5 | -1 | -1 | 57 | 20 | 18 | 0.17 | 3900298 | 45645710 | tier1 | Out-of-frame | 4204 | NA | 0.38892 |
| BLCA | TCGA-GU-A42R-01A | TCGA-GU-A42R | CREBBP|CASKIN1 | CREBBP | CASKIN1 | 16 | 16 | -1 | -1 | 48 | 28 | 24 | 0.052 | 3794895 | 2240359 | tier1 | In-frame | 4202 | NA | 0.38968 |
| BRCA | TCGA-B6-A0IA-01A | TCGA-B6-A0IA | CREBBP|NUBP1 | CREBBP | NUBP1 | 16 | 16 | -1 | 1 | 144 | 108 | 91 | 0.48 | 3819175 | 10846467 | tier1 | In-frame | 4209 | NA | 0.38685 |
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