Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | CP|WWTR1 | CP | WWTR1 | 3 | 3 | -1 | -1 | 4 | 6 | 5 | 2.9 | 148905839 | 149387678 | tier1 | CDS-5UTR | 4097 | NA | 0.36897 |
| LGG | TCGA-CS-6188-01A | TCGA-CS-6188 | HDAC9|AC010859.1 | HDAC9 | AC010859.1 | 7 | 8 | 1 | 1 | 4 | 3 | 3 | 0.092 | 18126836 | 98078237 | tier1 | 5UTR-CDS | 7636 | NA | 0.36199 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | HDAC9|LINGO2 | HDAC9 | LINGO2 | 7 | 9 | 1 | -1 | 4 | 2 | 2 | 0.51 | 18625145 | 28476023 | tier1 | CDS-5UTR | 7639 | non-validated | 0.36387 |
| BRCA | TCGA-AN-A0FZ-01A | TCGA-AN-A0FZ | HDAC9|PPL | HDAC9 | PPL | 7 | 16 | 1 | -1 | 2 | 2 | 1 | 1 | 18201972 | 4960950 | tier3 | Out-of-frame | 7640 | NA | 0.37155 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | HDAC9|AC005014.4 | HDAC9 | AC005014.4 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 2 | 18201972 | 16605938 | tier2 | In-frame | 7635 | non-validated | 0.36199 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | HDAC9|SNX10 | HDAC9 | SNX10 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 0.42 | 18201972 | 26400595 | tier3 | Out-of-frame | 7641 | NA | 0.36686 |
| LUSC | TCGA-68-A59I-01A | TCGA-68-A59I | HDAC9|C8orf34 | HDAC9 | C8orf34 | 7 | 8 | 1 | 1 | 10 | 3 | 1 | 0.014 | 18688306 | 69552611 | tier3 | Out-of-frame | 7638 | NA | 0 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | HDAC9|C1orf105 | HDAC9 | C1orf105 | 7 | 1 | 1 | 1 | 6 | 1 | 1 | 0.046 | 18535947 | 172434439 | tier4 | Out-of-frame | 7637 | NA | 0 |
| BRCA | TCGA-GI-A2C8-01A | TCGA-GI-A2C8 | RRM2B|ZFPM2 | RRM2B | ZFPM2 | 8 | 8 | -1 | 1 | 4 | 4 | 4 | 0.24 | 103231042 | 106431372 | tier1 | CDS-5UTR | 15132 | NA | 0 |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | RRM2B|ZNF704 | RRM2B | ZNF704 | 8 | 8 | -1 | -1 | 21 | 28 | 27 | 0.21 | 103231042 | 81555364 | tier1 | In-frame | 15133 | NA | 0 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | RSF1|ADAM2 | RSF1 | ADAM2 | 11 | 8 | -1 | -1 | 20 | 22 | 22 | 1.1 | 77458081 | 39607263 | tier1 | In-frame | 15142 | NA | 0 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | RSF1|PHF12 | RSF1 | PHF12 | 11 | 17 | -1 | -1 | 4 | 2 | 2 | 0.16 | 77531574 | 27254081 | tier1 | Out-of-frame | 15152 | non-validated | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | RSF1|TRPC6 | RSF1 | TRPC6 | 11 | 11 | -1 | -1 | 14 | 14 | 14 | 0.55 | 77475643 | 101375529 | tier1 | Out-of-frame | 15154 | NA | 0 |
| BRCA | TCGA-AN-A03X-01A | TCGA-AN-A03X | RSF1|HSPA13 | RSF1 | HSPA13 | 11 | 21 | -1 | -1 | 2 | 21 | 21 | 0.13 | 77531574 | 15753864 | tier2 | In-frame | 15144 | NA | 0 |
| BRCA | TCGA-BH-A0EB-01A | TCGA-BH-A0EB | RSF1|ODZ4 | RSF1 | ODZ4 | 11 | 11 | -1 | -1 | 4 | 4 | 4 | 5.8 | 77436590 | 78567223 | tier1 | In-frame | 15151 | NA | 0 |
| HNSC | TCGA-BA-A8YP-01A | TCGA-BA-A8YP | RSF1|ODZ4 | RSF1 | ODZ4 | 11 | 11 | -1 | -1 | 2 | 5 | 5 | 5.8 | 77531574 | 78449615 | tier2 | Out-of-frame | 15150 | NA | 0 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | RSF1|KLC2 | RSF1 | KLC2 | 11 | 11 | -1 | 1 | 5 | 5 | 4 | 0.44 | 77531574 | 66030285 | tier1 | In-frame | 15148 | NA | 0 |
| LUSC | TCGA-60-2726-01A | TCGA-60-2726 | RSF1|INTS4 | RSF1 | INTS4 | 11 | 11 | -1 | -1 | 3 | 1 | 1 | 0.37 | 77531574 | 77639593 | tier2 | In-frame | 15145 | non-validated | 0 |
| OV | TCGA-20-1684-01A | TCGA-20-1684 | RSF1|KCTD21 | RSF1 | KCTD21 | 11 | 11 | -1 | -1 | 4 | 1 | 1 | 0.42 | 77531574 | 77885629 | tier2 | CDS-5UTR | 15147 | NA | 0 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | RSF1|PRRC2C | RSF1 | PRRC2C | 11 | 1 | -1 | 1 | 27 | 26 | 24 | 1.2 | 77396150 | 171535372 | tier1 | In-frame | 15153 | validated | 0 |
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