Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | TRIO|SLC9A3 | TRIO | SLC9A3 | 5 | 5 | 1 | -1 | 13 | 23 | 19 | 1 | 14394239 | 492186 | tier2 | Out-of-frame | 18672 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | TRIO|LIFR | TRIO | LIFR | 5 | 5 | 1 | -1 | 5 | 2 | 2 | 0.094 | 14143991 | 38489347 | tier1 | In-frame | 18669 | NA | 0 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | TRIO|KDSR | TRIO | KDSR | 5 | 18 | 1 | -1 | 2 | 2 | 2 | 0.18 | 14297372 | 61006116 | tier3 | In-frame | 18668 | NA | 0 |
| LUAD | TCGA-75-6207-01A | TCGA-75-6207 | TRIO|UHRF2 | TRIO | UHRF2 | 5 | 9 | 1 | 1 | 8 | 19 | 19 | 1.4 | 14143991 | 6420912 | tier1 | Out-of-frame | 18676 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | TRIO|ADAMTS12 | TRIO | ADAMTS12 | 5 | 5 | 1 | -1 | 84 | 44 | 40 | 0.082 | 14381361 | 33881585 | tier1 | Out-of-frame | 18656 | NA | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | TRIO|TERT | TRIO | TERT | 5 | 5 | 1 | -1 | 89 | 70 | 63 | 0.13 | 14420130 | 1282739 | tier1 | In-frame | 18673 | non-validated | 0 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | TRIO|TERT | TRIO | TERT | 5 | 5 | 1 | -1 | 11 | 7 | 6 | 0.13 | 14406781 | 1282739 | tier1 | Out-of-frame | 18674 | non-validated | 0 |
| SARC | TCGA-DX-A7EF-01A | TCGA-DX-A7EF | TRIO|TERT | TRIO | TERT | 5 | 5 | 1 | -1 | 42 | 30 | 25 | 0.13 | 14420130 | 1282739 | tier1 | In-frame | 18675 | NA | 0 |
| BRCA | TCGA-LD-A7W5-01A | TCGA-LD-A7W5 | TRIO|FAM53B | TRIO | FAM53B | 5 | 10 | 1 | -1 | 5 | 6 | 6 | 0.18 | 14336836 | 126312173 | tier1 | In-frame | 18664 | NA | 0 |
| BRCA | TCGA-AO-A03O-01A | TCGA-AO-A03O | TRIO|IFT52 | TRIO | IFT52 | 5 | 20 | 1 | 1 | 9 | 8 | 8 | 2.4 | 14502766 | 42232400 | tier1 | Out-of-frame | 18666 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | TRIO|MARCH11 | TRIO | MARCH11 | 5 | 5 | 1 | -1 | 179 | 112 | 107 | 0.057 | 14488369 | 16091190 | tier1 | In-frame | 18670 | NA | 0 |
| HNSC | TCGA-BA-5153-01A | TCGA-BA-5153 | TRIO|PPP2R5E | TRIO | PPP2R5E | 5 | 14 | 1 | -1 | 55 | 24 | 23 | 0.22 | 14280545 | 63848875 | tier1 | In-frame | 18671 | non-validated | 0 |
| LIHC | TCGA-CC-5264-01A | TCGA-CC-5264 | TRIO|ZNF131 | TRIO | ZNF131 | 5 | 5 | 1 | 1 | 3 | 8 | 5 | 0.38 | 14143991 | 43161351 | tier1 | Out-of-frame | 18677 | NA | 0 |
| LUAD | TCGA-55-7283-01A | TCGA-55-7283 | TRIO|DNAH5 | TRIO | DNAH5 | 5 | 5 | 1 | -1 | 9 | 3 | 2 | 0.15 | 14391099 | 13931353 | tier1 | In-frame | 18663 | NA | 0 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | TRIO|FBXL7 | TRIO | FBXL7 | 5 | 5 | 1 | 1 | 9 | 8 | 8 | 0.52 | 14391099 | 15616092 | tier1 | Out-of-frame | 18665 | NA | 0 |
| PRAD | TCGA-EJ-5495-01A | TCGA-EJ-5495 | TRIO|ATAD1 | TRIO | ATAD1 | 5 | 10 | 1 | -1 | 2 | 3 | 3 | 1.8 | 14381361 | 89574369 | tier4 | CDS-5UTR | 18657 | NA | 0 |
| PRAD | TCGA-CH-5741-01A | TCGA-CH-5741 | TRIO|IQUB | TRIO | IQUB | 5 | 7 | 1 | -1 | 56 | 47 | 43 | 0.37 | 14304701 | 123097620 | tier1 | In-frame | 18667 | NA | 0 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | TRIO|CDH18 | TRIO | CDH18 | 5 | 5 | 1 | -1 | 13 | 4 | 4 | 0.4 | 14420130 | 19612710 | tier1 | In-frame | 18658 | NA | 0 |
| SARC | TCGA-DX-AB2X-01A | TCGA-DX-AB2X | TRIO|DAP | TRIO | DAP | 5 | 5 | 1 | -1 | 204 | 124 | 115 | 0.006 | 14420130 | 10748383 | tier1 | In-frame | 18662 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | TRIO|CLIC5 | TRIO | CLIC5 | 5 | 6 | 1 | -1 | 5 | 6 | 6 | 1.1 | 14420130 | 45922981 | tier1 | Out-of-frame | 18659 | NA | 0 |
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