Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-XC-AA0X-01A | TCGA-XC-AA0X | UBA6|TMPRSS11D | UBA6 | TMPRSS11D | 4 | 4 | -1 | -1 | 3 | 3 | 1 | 2.3 | 68494789 | 68725396 | tier3 | Out-of-frame | 19030 | NA | 0 |
| BRCA | TCGA-A2-A4S3-01A | TCGA-A2-A4S3 | UBA6|STAP1 | UBA6 | STAP1 | 4 | 4 | -1 | 1 | 3 | 1 | 1 | 0.099 | 68504661 | 68472014 | tier2 | Out-of-frame | 19029 | NA | 0 |
| BLCA | TCGA-BT-A20U-01A | TCGA-BT-A20U | ATP6V0A1|STAT5A | ATP6V0A1 | STAT5A | 17 | 17 | 1 | 1 | 18 | 32 | 29 | 0.63 | 40610981 | 40440074 | tier1 | 5UTR-5UTR | 1748 | NA | 0.3749 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ATP6V0A1|STAT5B | ATP6V0A1 | STAT5B | 17 | 17 | 1 | -1 | 3 | 6 | 6 | 0.75 | 40610981 | 40384155 | tier1 | 5UTR-5UTR | 1749 | NA | 0.37743 |
| BRCA | TCGA-B6-A0I1-01A | TCGA-B6-A0I1 | ATP6V0A1|ATF6 | ATP6V0A1 | ATF6 | 17 | 1 | 1 | 1 | 9 | 6 | 6 | 0.091 | 40613029 | 161832988 | tier1 | Out-of-frame | 1745 | non-validated | 0.37087 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | ATP6V0A1|MSI2 | ATP6V0A1 | MSI2 | 17 | 17 | 1 | 1 | 34 | 35 | 32 | 0.026 | 40635149 | 55607037 | tier1 | In-frame | 1747 | NA | 0.34895 |
| GBM | TCGA-14-0787-01A | TCGA-14-0787 | ATP6V0A1|MB | ATP6V0A1 | MB | 17 | 22 | 1 | -1 | 10 | 15 | 12 | 0.014 | 40622236 | 36033255 | tier1 | NA | 1746 | NA | 0.34355 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SLC4A7|TYR | SLC4A7 | TYR | 3 | 11 | -1 | 1 | 4 | 2 | 2 | 0.68 | 27525558 | 88924370 | tier1 | In-frame | 16276 | NA | 0 |
| BRCA | TCGA-E2-A14Y-01A | TCGA-E2-A14Y | MAP2K3|NKAIN3 | MAP2K3 | NKAIN3 | 17 | 8 | 1 | 1 | 13 | 4 | 4 | 0.16 | 21188281 | 63492098 | tier1 | Out-of-frame | 9836 | NA | 0.38895 |
| THCA | TCGA-EM-A3FP-01A | TCGA-EM-A3FP | VCL|FGFR2 | VCL | FGFR2 | 10 | 10 | 1 | -1 | 13 | 16 | 14 | 0.92 | 75758133 | 123239535 | tier1 | In-frame | 19533 | NA | 0 |
| LUSC | TCGA-43-6770-01A | TCGA-43-6770 | VCL|SFTPD | VCL | SFTPD | 10 | 10 | 1 | -1 | 10 | 11 | 4 | 0.021 | 75834661 | 81706418 | tier1 | CDS-5UTR | 19536 | NA | 0 |
| ESCA | TCGA-L5-A4OT-01A | TCGA-L5-A4OT | VCL|C10orf11 | VCL | C10orf11 | 10 | 10 | 1 | 1 | 2 | 13 | 13 | 0.68 | 75802911 | 77795766 | tier2 | In-frame | 19532 | NA | 0 |
| HNSC | TCGA-CR-7402-01A | TCGA-CR-7402 | VCL|SEC24C | VCL | SEC24C | 10 | 10 | 1 | 1 | 61 | 64 | 61 | 0.89 | 75802911 | 75526518 | tier1 | In-frame | 19535 | NA | 0 |
| HNSC | TCGA-CN-A499-01A | TCGA-CN-A499 | VCL|SFXN2 | VCL | SFXN2 | 10 | 10 | 1 | 1 | 5 | 5 | 5 | 0.042 | 75802911 | 104486369 | tier1 | CDS-5UTR | 19537 | NA | 0 |
| OV | TCGA-61-1743-01A | TCGA-61-1743 | VCL|KIAA0913 | VCL | KIAA0913 | 10 | 10 | 1 | 1 | 2 | 6 | 6 | 0.34 | 75758133 | 75553346 | tier2 | In-frame | 19534 | NA | 0 |
| SARC | TCGA-DX-A3UD-01A | TCGA-DX-A3UD | VCL|C10orf11 | VCL | C10orf11 | 10 | 10 | 1 | 1 | 11 | 10 | 10 | 0.68 | 75860855 | 78316967 | tier1 | Out-of-frame | 19531 | NA | 0 |
| LIHC | TCGA-FV-A495-01A | TCGA-FV-A495 | DAPK2|FAM96A | DAPK2 | FAM96A | 15 | 15 | -1 | -1 | 9 | 11 | 10 | 1.2 | 64332369 | 64381050 | tier1 | Out-of-frame | 4552 | non-validated | 0.37337 |
| PAAD | TCGA-IB-A5ST-01A | TCGA-IB-A5ST | DAPK2|FAM96A | DAPK2 | FAM96A | 15 | 15 | -1 | -1 | 2 | 5 | 4 | 1.2 | 64332369 | 64367736 | tier4 | Out-of-frame | 4553 | NA | 0.37337 |
| PAAD | TCGA-IB-7885-01A | TCGA-IB-7885 | TIMP2|ANXA1 | TIMP2 | ANXA1 | 17 | 9 | -1 | 1 | 2 | 23 | 18 | 0.29 | 76849059 | 75772570 | tier3 | 3UTR-5UTR | 17832 | NA | 0 |
| PRAD | TCGA-G9-6499-01A | TCGA-G9-6499 | TIMP2|CEP57 | TIMP2 | CEP57 | 17 | 11 | -1 | 1 | 2 | 14 | 11 | 0.41 | 76849059 | 95551991 | tier3 | 3UTR-CDS | 17833 | NA | 0 |
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