Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-2Z-A9J2-01A | TCGA-2Z-A9J2 | BRD9|TERT | BRD9 | TERT | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.008 | 892721 | 1282739 | tier2 | In-frame | 2207 | NA | 0.37048 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | BRD9|STARD3 | BRD9 | STARD3 | 5 | 17 | -1 | 1 | 82 | 1030 | 915 | 2.7 | 876216 | 37813261 | tier1 | In-frame | 2206 | NA | 0.34627 |
| LUSC | TCGA-77-7138-01A | TCGA-77-7138 | BRD9|CBFB | BRD9 | CBFB | 5 | 16 | -1 | 1 | 4 | 4 | 4 | 0.02 | 884053 | 67063630 | tier1 | In-frame | 2204 | NA | 0.36071 |
| LUSC | TCGA-90-6837-01A | TCGA-90-6837 | BRD9|CEP72 | BRD9 | CEP72 | 5 | 5 | -1 | 1 | 42 | 12 | 12 | 2.4 | 891270 | 647920 | tier1 | In-frame | 2205 | NA | 0.35751 |
| GBM | TCGA-06-1804-01A | TCGA-06-1804 | SLC39A9|BCL2L13 | SLC39A9 | BCL2L13 | 14 | 22 | 1 | 1 | 3 | 11 | 10 | 2 | 69908983 | 18138428 | tier1 | CDS-5UTR | 16212 | NA | 0 |
| BRCA | TCGA-AN-A0AS-01A | TCGA-AN-A0AS | SLC39A9|USP15 | SLC39A9 | USP15 | 14 | 12 | 1 | 1 | 4 | 13 | 12 | 0.17 | 69890919 | 62783211 | tier1 | Out-of-frame | 16215 | NA | 0 |
| BRCA | TCGA-D8-A1XQ-01A | TCGA-D8-A1XQ | SLC39A9|RAD51B | SLC39A9 | RAD51B | 14 | 14 | 1 | 1 | 11 | 5 | 4 | 1.1 | 69866182 | 69077723 | tier1 | Out-of-frame | 16213 | NA | 0 |
| OV | TCGA-30-1860-01A | TCGA-30-1860 | SLC39A9|SEC23IP | SLC39A9 | SEC23IP | 14 | 10 | 1 | 1 | 2 | 4 | 4 | 0.59 | 69866182 | 121689119 | tier2 | In-frame | 16214 | NA | 0 |
| HNSC | TCGA-CQ-A4CI-01A | TCGA-CQ-A4CI | GRN|COL11A1 | GRN | COL11A1 | 17 | 1 | 1 | -1 | 2 | 18 | 1 | 0.6 | 42430470 | 103491508 | tier3 | 3UTR-CDS | 7470 | NA | 0.36786 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | GRN|ERBB3 | GRN | ERBB3 | 17 | 12 | 1 | 1 | 2 | 11 | 7 | 0.04 | 42430470 | 56492035 | tier3 | 3UTR-5UTR | 7471 | NA | 0.3845 |
| BLCA | TCGA-FD-A3SS-01A | TCGA-FD-A3SS | GRN|CDKN3 | GRN | CDKN3 | 17 | 14 | 1 | 1 | 2 | 43 | 29 | 0.087 | 42430470 | 54877897 | tier3 | NA | 7468 | NA | 0.36692 |
| CESC | TCGA-HM-A4S6-01A | TCGA-HM-A4S6 | GRN|PLAT | GRN | PLAT | 17 | 8 | 1 | -1 | 2 | 52 | 39 | 0.063 | 42430470 | 42051245 | tier4 | NA | 7474 | NA | 0.37618 |
| HNSC | TCGA-CV-7090-01A | TCGA-CV-7090 | GRN|CLCN3 | GRN | CLCN3 | 17 | 4 | 1 | 1 | 2 | 6 | 5 | 1.9 | 42430470 | 170623929 | tier4 | NA | 7469 | non-validated | 0.36833 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | GRN|FAR1 | GRN | FAR1 | 17 | 11 | 1 | 1 | 3 | 10 | 5 | 1.7 | 42430470 | 13744912 | tier1 | NA | 7472 | NA | 0.35798 |
| BLCA | TCGA-S5-A6DX-01A | TCGA-S5-A6DX | GRN|ZC3H3 | GRN | ZC3H3 | 17 | 8 | 1 | -1 | 99 | 80 | 73 | 0.27 | 42428168 | 144567117 | tier1 | NA | 7475 | NA | 0.36422 |
| BRCA | TCGA-D8-A1X6-01A | TCGA-D8-A1X6 | GRN|NCALD | GRN | NCALD | 17 | 8 | 1 | -1 | 2 | 7 | 5 | 0.007 | 42430470 | 102813898 | tier3 | 3UTR-5UTR | 7473 | NA | 0.36947 |
| BLCA | TCGA-FD-A3B3-01A | TCGA-FD-A3B3 | ARID4A|C14orf149 | ARID4A | C14orf149 | 14 | 14 | 1 | -1 | 5 | 2 | 2 | 0.32 | 58814596 | 59946069 | tier1 | Out-of-frame | 1375 | NA | 0 |
| LIHC | TCGA-BD-A3ER-01A | TCGA-BD-A3ER | ARID4A|NAA30 | ARID4A | NAA30 | 14 | 14 | 1 | 1 | 14 | 19 | 18 | 0.46 | 58766578 | 57863470 | tier1 | In-frame | 1376 | NA | 0.36475 |
| LUAD | TCGA-78-8660-01A | TCGA-78-8660 | ARID4A|NPAS3 | ARID4A | NPAS3 | 14 | 14 | 1 | 1 | 3 | 3 | 2 | 1.2 | 58766578 | 33836392 | tier1 | Out-of-frame | 1377 | NA | 0.36976 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | UBA6|CCNA2 | UBA6 | CCNA2 | 4 | 4 | -1 | -1 | 2 | 5 | 5 | 2.2 | 68566767 | 122742246 | tier2 | Out-of-frame | 19028 | NA | 0 |
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