Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A4IS-01A | TCGA-EB-A4IS | VIM|LAMA4 | VIM | LAMA4 | 10 | 6 | 1 | -1 | 2 | 103 | 1 | 0.5 | 17279584 | 112507969 | tier3 | 3UTR-CDS | 19573 | NA | 0 |
| SKCM | TCGA-EE-A2GT-06A | TCGA-EE-A2GT | VIM|LAMA4 | VIM | LAMA4 | 10 | 6 | 1 | -1 | 2 | 187 | 1 | 0.5 | 17279584 | 112507969 | tier3 | 3UTR-CDS | 19574 | non-validated | 0 |
| STAD | TCGA-BR-8682-01A | TCGA-BR-8682 | VIM|STAT6 | VIM | STAT6 | 10 | 12 | 1 | -1 | 2 | 9 | 1 | 0.3 | 17279584 | 57496773 | tier3 | NA | 19581 | non-validated | 0 |
| HNSC | TCGA-D6-6826-01A | TCGA-D6-6826 | VIM|EEA1 | VIM | EEA1 | 10 | 12 | 1 | -1 | 2 | 89 | 49 | 0.061 | 17279592 | 93229203 | tier3 | NA | 19571 | NA | 0 |
| KIRC | TCGA-B0-5399-01A | TCGA-B0-5399 | VIM|DNM1L | VIM | DNM1L | 10 | 12 | 1 | 1 | 2 | 80 | 15 | 0.35 | 17279584 | 32905677 | tier4 | NA | 19570 | NA | 0 |
| LUAD | TCGA-75-7025-01A | TCGA-75-7025 | VIM|IQCE | VIM | IQCE | 10 | 7 | 1 | 1 | 2 | 46 | 40 | 0.52 | 17279592 | 2641075 | tier3 | 3UTR-CDS | 19572 | NA | 0 |
| SKCM | TCGA-D3-A2JO-06A | TCGA-D3-A2JO | VIM|PEX1 | VIM | PEX1 | 10 | 7 | 1 | -1 | 2 | 31 | 26 | 1.2 | 17279592 | 92146729 | tier3 | 3UTR-5UTR | 19575 | NA | 0 |
| SKCM | TCGA-BF-A1PV-01A | TCGA-BF-A1PV | VIM|PLEKHA5 | VIM | PLEKHA5 | 10 | 12 | 1 | 1 | 2 | 2 | 2 | 6 | 17279592 | 19514516 | tier4 | 3UTR-CDS | 19576 | NA | 0 |
| UVM | TCGA-VD-A8K9-01A | TCGA-VD-A8K9 | VIM|PLEKHA5 | VIM | PLEKHA5 | 10 | 12 | 1 | 1 | 2 | 268 | 161 | 6 | 17279592 | 19441012 | tier4 | NA | 19577 | NA | 0 |
| BRCA | TCGA-E9-A247-01A | TCGA-E9-A247 | FAS|CTNND2 | FAS | CTNND2 | 10 | 5 | 1 | -1 | 3 | 2 | 2 | 0.006 | 90762951 | 11023091 | tier2 | In-frame | 6261 | NA | 0.38805 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | CD44|EXT2 | CD44 | EXT2 | 11 | 11 | 1 | 1 | 32 | 48 | 45 | 0.56 | 35160917 | 44265699 | tier1 | Out-of-frame | 3273 | NA | 0.3739 |
| UCS | TCGA-NG-A4VU-01A | TCGA-NG-A4VU | CD44|CAPRIN1 | CD44 | CAPRIN1 | 11 | 11 | 1 | 1 | 173 | 103 | 82 | 2.3 | 35160917 | 34110942 | tier2 | In-frame | 3272 | NA | 0.37609 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | MIPEP|TNFRSF19 | MIPEP | TNFRSF19 | 13 | 13 | -1 | 1 | 4 | 1 | 1 | 1.2 | 24410379 | 24190006 | tier4 | In-frame | 10380 | NA | 0.35875 |
| COAD | TCGA-DM-A28F-01A | TCGA-DM-A28F | MIPEP|MYO16 | MIPEP | MYO16 | 13 | 13 | -1 | 1 | 12 | 11 | 7 | 2 | 24380089 | 109507791 | tier1 | In-frame | 10379 | NA | 0.36557 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | MIPEP|GATAD2A | MIPEP | GATAD2A | 13 | 19 | -1 | 1 | 2 | 5 | 5 | 0.49 | 24432999 | 19603115 | tier3 | In-frame | 10378 | NA | 0.36846 |
| LGG | TCGA-TQ-A7RS-01A | TCGA-TQ-A7RS | PRKCH|MNAT1 | PRKCH | MNAT1 | 14 | 14 | 1 | 1 | 10 | 7 | 6 | 0.34 | 61789182 | 61434947 | tier1 | Out-of-frame | 13558 | NA | 0.39046 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | IFNGR1|SMCHD1 | IFNGR1 | SMCHD1 | 6 | 18 | -1 | 1 | 7 | 4 | 3 | 0.66 | 137540380 | 2760650 | tier1 | Out-of-frame | 8063 | NA | 0.36563 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | VRK2|CHSY1 | VRK2 | CHSY1 | 2 | 15 | 1 | -1 | 2 | 7 | 5 | 0.4 | 58276102 | 101719185 | tier3 | Out-of-frame | 19682 | NA | 0 |
| LUSC | TCGA-43-3920-01A | TCGA-43-3920 | VRK2|EIF2C3 | VRK2 | EIF2C3 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1.1 | 58276102 | 36520547 | tier2 | Out-of-frame | 19683 | non-validated | 0 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | BRD9|TERT | BRD9 | TERT | 5 | 5 | -1 | -1 | 6 | 57 | 17 | 0.008 | 891270 | 1282739 | tier1 | In-frame | 2208 | NA | 0.37048 |
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