Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-DS-A7WH-01A | TCGA-DS-A7WH | ZRANB1|LHPP | ZRANB1 | LHPP | 10 | 10 | 1 | 1 | 7 | 13 | 11 | 1.1 | 126672257 | 126301833 | tier1 | Out-of-frame | 20708 | NA | 0 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | NRXN3|ADCK1 | NRXN3 | ADCK1 | 14 | 14 | 1 | 1 | 6 | 6 | 6 | 0.11 | 78710145 | 78397861 | tier1 | Out-of-frame | 11766 | NA | 0.36707 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | NRXN3|TSHR | NRXN3 | TSHR | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 2.8 | 79454484 | 81528492 | tier2 | Out-of-frame | 11768 | NA | 0.38204 |
| LGG | TCGA-HT-A614-01A | TCGA-HT-A614 | NRXN3|IFT74 | NRXN3 | IFT74 | 14 | 9 | 1 | 1 | 4 | 1 | 1 | 4.6 | 80164280 | 27029023 | tier3 | Out-of-frame | 11767 | NA | 0.36645 |
| LIHC | TCGA-WJ-A86L-01A | TCGA-WJ-A86L | CPS1|PLCD4 | CPS1 | PLCD4 | 2 | 2 | 1 | 1 | 39 | 23 | 18 | 0.19 | 211444494 | 219480430 | tier1 | CDS-5UTR | 4140 | NA | 0.37137 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | CPS1|PLEKHM3 | CPS1 | PLEKHM3 | 2 | 2 | 1 | -1 | 3 | 2 | 2 | 0.063 | 211481265 | 208693220 | tier1 | In-frame | 4141 | NA | 0.36034 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | CPS1|SGOL2 | CPS1 | SGOL2 | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 0.87 | 211515162 | 201448172 | tier3 | Out-of-frame | 4142 | NA | 0.35727 |
| HNSC | TCGA-DQ-5624-01A | TCGA-DQ-5624 | ERP44|CHRDL2 | ERP44 | CHRDL2 | 9 | 11 | -1 | -1 | 164 | 117 | 105 | 0.092 | 102814699 | 74429877 | tier1 | In-frame | 5791 | NA | 0.35276 |
| KIRC | TCGA-A3-3319-01A | TCGA-A3-3319 | BIRC3|CCT5 | BIRC3 | CCT5 | 11 | 5 | 1 | 1 | 2 | 1 | 1 | 2.4 | 102208465 | 10250033 | tier3 | 3UTR-5UTR | 2105 | NA | 0.37675 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | ABCC2|C3orf78 | ABCC2 | C3orf78 | 10 | 3 | 1 | 1 | 158 | 171 | 166 | 1.2 | 101567986 | 52574440 | tier1 | Out-of-frame | 57 | NA | 0 |
| LIHC | TCGA-DD-AAEA-01A | TCGA-DD-AAEA | ABCC2|CTNNA3 | ABCC2 | CTNNA3 | 10 | 10 | 1 | -1 | 243 | 303 | 294 | 0.05 | 101544538 | 67680375 | tier1 | In-frame | 58 | NA | 0.36402 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | PHF20|RPN2 | PHF20 | RPN2 | 20 | 20 | 1 | 1 | 68 | 54 | 51 | 0.15 | 34528969 | 35812583 | tier1 | In-frame | 12711 | NA | 0.35814 |
| ACC | TCGA-OR-A5JT-01A | TCGA-OR-A5JT | PHF20|SPAG4 | PHF20 | SPAG4 | 20 | 20 | 1 | 1 | 23 | 14 | 14 | 100 | 34487570 | 34207117 | tier1 | In-frame | 12712 | NA | 0.35505 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | PHF20|DYNLRB1 | PHF20 | DYNLRB1 | 20 | 20 | 1 | 1 | 42 | 176 | 152 | 0.088 | 34360001 | 33114073 | tier1 | 5UTR-CDS | 12710 | NA | 0.36116 |
| LUAD | TCGA-91-6831-01A | TCGA-91-6831 | PHF20|ADNP | PHF20 | ADNP | 20 | 20 | 1 | -1 | 2 | 4 | 4 | 0.11 | 34389527 | 49511049 | tier4 | Out-of-frame | 12709 | NA | 0.35342 |
| LUAD | TCGA-75-7031-01A | TCGA-75-7031 | TYMP|PPP6R2 | TYMP | PPP6R2 | 22 | 22 | -1 | 1 | 15 | 10 | 9 | 0.81 | 50968333 | 50810449 | tier1 | 5UTR-5UTR | 19002 | NA | 0 |
| BLCA | TCGA-K4-A5RH-01A | TCGA-K4-A5RH | VIM|PTPRC | VIM | PTPRC | 10 | 1 | 1 | 1 | 2 | 4 | 2 | 0.41 | 17279592 | 198710998 | tier3 | 3UTR-CDS | 19578 | NA | 0 |
| SKCM | TCGA-EE-A2MF-06A | TCGA-EE-A2MF | VIM|SGK3 | VIM | SGK3 | 10 | 8 | 1 | 1 | 2 | 6 | 6 | 1.1 | 17279592 | 67716610 | tier3 | 3UTR-CDS | 19579 | NA | 0 |
| ACC | TCGA-PK-A5HB-01A | TCGA-PK-A5HB | VIM|CLCN3 | VIM | CLCN3 | 10 | 4 | 1 | 1 | 2 | 229 | 162 | 0.51 | 17279592 | 170623929 | tier4 | NA | 19569 | NA | 0 |
| KIRC | TCGA-A3-3317-01A | TCGA-A3-3317 | VIM|SIAE | VIM | SIAE | 10 | 11 | 1 | -1 | 2 | 25 | 6 | 0.42 | 17279584 | 124543777 | tier3 | 3UTR-5UTR | 19580 | NA | 0 |
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