Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | TRIM27|PTPRR | TRIM27 | PTPRR | 6 | 12 | -1 | -1 | 75 | 102 | 93 | 0.37 | 28879473 | 71050597 | tier1 | In-frame | 18625 | NA | 0 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | TRIO|CDH18 | TRIO | CDH18 | 5 | 5 | 1 | -1 | 13 | 4 | 4 | 0.4 | 14420130 | 19612710 | tier1 | In-frame | 18658 | NA | 0 |
| SARC | TCGA-DX-A8BX-01A | TCGA-DX-A8BX | TRIP12|ITM2C | TRIP12 | ITM2C | 2 | 2 | -1 | 1 | 30 | 41 | 39 | 1.7 | 230723488 | 231738132 | tier1 | Out-of-frame | 18683 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | TRPV4|KSR2 | TRPV4 | KSR2 | 12 | 12 | -1 | -1 | 2 | 3 | 3 | 0.16 | 110271155 | 118020164 | tier2 | 5UTR-CDS | 18741 | NA | 0 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | TSFM|FRS2 | TSFM | FRS2 | 12 | 12 | 1 | 1 | 15 | 17 | 14 | 0.53 | 58186856 | 69879982 | tier1 | NA | 18768 | NA | 0 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | TSPAN18|TEX13B | TSPAN18 | TEX13B | 11 | X | 1 | -1 | 2 | 5 | 4 | 0.19 | 44882020 | 107225389 | tier2 | 5UTR-5UTR | 18795 | NA | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | TSPAN31|WIF1 | TSPAN31 | WIF1 | 12 | 12 | 1 | -1 | 143 | 82 | 75 | 3.3 | 58140914 | 65471634 | tier1 | In-frame | 18798 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | TSPAN8|ASH2L | TSPAN8 | ASH2L | 12 | 8 | -1 | 1 | 41 | 20 | 18 | 0.53 | 71676496 | 37996334 | tier1 | 5UTR-CDS | 18804 | validated | 0 |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | TSPAN8|IL26 | TSPAN8 | IL26 | 12 | 12 | -1 | -1 | 13 | 13 | 13 | 0.057 | 71676496 | 68595863 | tier1 | 5UTR-CDS | 18806 | NA | 0 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | TSPAN8|OSBPL8 | TSPAN8 | OSBPL8 | 12 | 12 | -1 | -1 | 7 | 14 | 14 | 1.4 | 71551399 | 76752591 | tier1 | In-frame | 18807 | NA | 0 |
| SARC | TCGA-JV-A5VF-01A | TCGA-JV-A5VF | TSPAN9|TMEM200A | TSPAN9 | TMEM200A | 12 | 6 | 1 | 1 | 3 | 2 | 2 | 0.77 | 3186619 | 130761552 | tier1 | 5UTR-5UTR | 18817 | NA | 0 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | TTC7B|SLC35F4 | TTC7B | SLC35F4 | 14 | 14 | -1 | -1 | 10 | 4 | 3 | 0.82 | 91196419 | 58048151 | tier1 | In-frame | 18893 | NA | 0 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | TTK|TMEM63B | TTK | TMEM63B | 6 | 6 | 1 | 1 | 24 | 17 | 15 | 1.5 | 80721265 | 44119583 | tier1 | In-frame | 18896 | NA | 0 |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | TUBGCP2|SORBS1 | TUBGCP2 | SORBS1 | 10 | 10 | -1 | -1 | 11 | 8 | 7 | 0.84 | 135111456 | 97144042 | tier1 | In-frame | 18942 | NA | 0 |
| SARC | TCGA-DX-A23U-01A | TCGA-DX-A23U | TUFT1|PKN2 | TUFT1 | PKN2 | 1 | 1 | 1 | 1 | 13 | 5 | 5 | 2.4 | 151512902 | 89206671 | tier1 | In-frame | 18956 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|CTD-2021H9.3 | TULP3 | CTD-2021H9.3 | 12 | 12 | 1 | -1 | 172 | 76 | 75 | 0.74 | 3000154 | 71441459 | tier1 | Out-of-frame | 18958 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|FAM190B | TULP3 | FAM190B | 12 | 10 | 1 | 1 | 13 | 11 | 11 | 2.9 | 3043727 | 86177527 | tier1 | In-frame | 18959 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TULP3|UGCG | TULP3 | UGCG | 12 | 9 | 1 | 1 | 2 | 4 | 4 | 5.3 | 3043727 | 114676885 | tier2 | Out-of-frame | 18961 | NA | 0 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | TXNRD1|SLC41A2 | TXNRD1 | SLC41A2 | 12 | 12 | 1 | -1 | 54 | 21 | 19 | 0.18 | 104721449 | 105239752 | tier1 | Out-of-frame | 18994 | NA | 0 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | UBE2D1|MFSD11 | UBE2D1 | MFSD11 | 10 | 17 | 1 | 1 | 2 | 1 | 1 | 1.7 | 60094985 | 74771079 | tier3 | Out-of-frame | 19054 | NA | 0 |
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