Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-HS-A5N9-01A | TCGA-HS-A5N9 | SVIL|KIAA1217 | SVIL | KIAA1217 | 10 | 10 | -1 | 1 | 3 | 2 | 2 | 0.18 | 29975482 | 24508555 | tier1 | 5UTR-5UTR | 17218 | NA | 0 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | SVIL|STAM | SVIL | STAM | 10 | 10 | -1 | 1 | 7 | 4 | 3 | 0.85 | 29923349 | 17702463 | tier1 | 5UTR-CDS | 17220 | NA | 0 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | TAB2|KCNU1 | TAB2 | KCNU1 | 6 | 8 | 1 | 1 | 5 | 3 | 3 | 2.1 | 149663969 | 36721922 | tier1 | 5UTR-CDS | 17289 | NA | 0 |
| SARC | TCGA-X6-A7WA-01A | TCGA-X6-A7WA | TAB3|DMD | TAB3 | DMD | X | X | -1 | -1 | 2 | 3 | 1 | 0.075 | 30870895 | 31366751 | tier3 | In-frame | 17293 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | TBC1D15|SLC16A7 | TBC1D15 | SLC16A7 | 12 | 12 | 1 | 1 | 44 | 28 | 26 | 0.077 | 72266783 | 60165000 | tier1 | Out-of-frame | 17457 | non-validated | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | TBC1D30|PLP1 | TBC1D30 | PLP1 | 12 | X | 1 | 1 | 4 | 2 | 2 | 0.24 | 65222289 | 103031781 | tier1 | 5UTR-5UTR | 17493 | NA | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | TBC1D30|SYT1 | TBC1D30 | SYT1 | 12 | 12 | 1 | 1 | 16 | 2 | 2 | 0.1 | 65179825 | 79371579 | tier1 | 5UTR-5UTR | 17495 | validated | 0 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | TBX15|MAGI3 | TBX15 | MAGI3 | 1 | 1 | -1 | 1 | 10 | 3 | 3 | 0.24 | 119530214 | 114123164 | tier1 | In-frame | 17565 | validated | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | TCTN1|CPM | TCTN1 | CPM | 12 | 12 | 1 | -1 | 26 | 29 | 27 | 0.16 | 111078954 | 69236109 | tier2 | NA | 17615 | NA | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | TEAD4|ERC1 | TEAD4 | ERC1 | 12 | 12 | 1 | 1 | 8 | 2 | 2 | 0.16 | 3069206 | 1553728 | tier1 | 5UTR-CDS | 17641 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TEAD4|MAP3K12 | TEAD4 | MAP3K12 | 12 | 12 | 1 | -1 | 18 | 6 | 5 | 0.21 | 3069206 | 53880929 | tier1 | 5UTR-CDS | 17643 | NA | 0 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | TGFBR2|XPC | TGFBR2 | XPC | 3 | 3 | 1 | -1 | 58 | 63 | 58 | 0.18 | 30648469 | 14214562 | tier1 | In-frame | 17741 | non-validated | 0 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | TGFBRAP1|DPP10 | TGFBRAP1 | DPP10 | 2 | 2 | -1 | 1 | 9 | 8 | 7 | 1.3 | 105912813 | 116066815 | tier1 | In-frame | 17747 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | THOP1|NOTCH3 | THOP1 | NOTCH3 | 19 | 19 | 1 | -1 | 2 | 1 | 1 | 0.06 | 2785676 | 15308389 | tier2 | In-frame | 17775 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | TIAM1|NCAM2 | TIAM1 | NCAM2 | 21 | 21 | -1 | 1 | 8 | 4 | 4 | 0.17 | 32931240 | 22696703 | tier1 | 5UTR-CDS | 17819 | NA | 0 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | TIPIN|ATP8B4 | TIPIN | ATP8B4 | 15 | 15 | -1 | -1 | 2 | 4 | 3 | 1 | 66648977 | 50226379 | tier2 | 5UTR-CDS | 17836 | NA | 0 |
| SARC | TCGA-DX-A8BV-01A | TCGA-DX-A8BV | TLR4|SLC31A1 | TLR4 | SLC31A1 | 9 | 9 | 1 | 1 | 5 | 3 | 3 | 0.23 | 120471007 | 116018394 | tier1 | CDS-5UTR | 17860 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TM7SF3|KCNC2 | TM7SF3 | KCNC2 | 12 | 12 | -1 | -1 | 58 | 33 | 30 | 1.9 | 27143383 | 75445097 | tier1 | Out-of-frame | 17869 | NA | 0 |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | TMCC3|TRHDE | TMCC3 | TRHDE | 12 | 12 | -1 | 1 | 5 | 1 | 1 | 1.2 | 95044129 | 72680461 | tier2 | Out-of-frame | 17902 | NA | 0 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | TMCO3|ATP11A | TMCO3 | ATP11A | 13 | 13 | 1 | 1 | 62 | 17 | 16 | 0.96 | 114193822 | 113439449 | tier1 | Out-of-frame | 17903 | NA | 0 |
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