Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 267 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | SFT2D2|GPR161 | SFT2D2 | GPR161 | 1 | 1 | 1 | -1 | 7 | 4 | 4 | 0.11 | 168195380 | 168074132 | tier1 | CDS-5UTR | 15765 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | SLC16A7|ACSS3 | SLC16A7 | ACSS3 | 12 | 12 | 1 | 1 | 81 | 55 | 47 | 0.78 | 59990017 | 81528595 | tier1 | 5UTR-CDS | 16033 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | SLC16A7|BEST3 | SLC16A7 | BEST3 | 12 | 12 | 1 | -1 | 2 | 1 | 1 | 0.57 | 60169256 | 70072673 | tier2 | In-frame | 16034 | non-validated | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | SLC16A7|NUP107 | SLC16A7 | NUP107 | 12 | 12 | 1 | 1 | 212 | 175 | 150 | 0.17 | 59990017 | 69127232 | tier1 | 5UTR-CDS | 16037 | validated | 0 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | SLC16A7|SYT1 | SLC16A7 | SYT1 | 12 | 12 | 1 | 1 | 46 | 20 | 17 | 0.064 | 59990017 | 79441077 | tier1 | 5UTR-5UTR | 16040 | NA | 0 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | SLC20A1|ARRDC5 | SLC20A1 | ARRDC5 | 2 | 19 | 1 | -1 | 6 | 2 | 2 | 0.2 | 113405315 | 4896888 | tier1 | Out-of-frame | 16054 | NA | 0 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | SLC2A13|ARHGDIB | SLC2A13 | ARHGDIB | 12 | 12 | -1 | -1 | 57 | 64 | 55 | 0.089 | 40422103 | 15100883 | tier1 | In-frame | 16130 | validated | 0 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | SLC2A13|HSD17B6 | SLC2A13 | HSD17B6 | 12 | 12 | -1 | 1 | 2 | 3 | 2 | 1.5 | 40499055 | 57167618 | tier2 | CDS-5UTR | 16132 | non-validated | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | SLC38A2|RAB3IP | SLC38A2 | RAB3IP | 12 | 12 | -1 | 1 | 38 | 60 | 54 | 5.9 | 46766292 | 70178500 | tier1 | 5UTR-CDS | 16186 | NA | 0 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | SLC39A14|IL4I1 | SLC39A14 | IL4I1 | 8 | 19 | 1 | -1 | 8 | 11 | 10 | 0.39 | 22224921 | 50399310 | tier1 | 5UTR-CDS | 16201 | NA | 0 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | SLC41A2|DNM3 | SLC41A2 | DNM3 | 12 | 1 | -1 | 1 | 51 | 29 | 24 | 0.029 | 105280071 | 172100315 | tier1 | Out-of-frame | 16223 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | SLC41A2|LIN7A | SLC41A2 | LIN7A | 12 | 12 | -1 | -1 | 77 | 34 | 34 | 3.4 | 105351866 | 81242101 | tier1 | NA | 16224 | NA | 0 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | SLC44A1|PALM2-AKAP2 | SLC44A1 | PALM2-AKAP2 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 0.23 | 108007185 | 112898407 | tier2 | In-frame | 16230 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | SLC44A2|PTPRQ | SLC44A2 | PTPRQ | 19 | 12 | 1 | 1 | 8 | 8 | 8 | 3.1 | 10713237 | 80981908 | tier1 | In-frame | 16231 | NA | 0 |
| SARC | TCGA-PC-A5DL-01A | TCGA-PC-A5DL | SLC47A2|SPECC1 | SLC47A2 | SPECC1 | 17 | 17 | -1 | 1 | 4 | 3 | 3 | 2.3 | 19617138 | 20013740 | tier1 | Out-of-frame | 16268 | NA | 0 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | SLC4A8|MGAT4C | SLC4A8 | MGAT4C | 12 | 12 | 1 | -1 | 2 | 3 | 3 | 1.7 | 51865316 | 86443501 | tier2 | CDS-5UTR | 16278 | NA | 0 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | SLC6A15|C12orf28 | SLC6A15 | C12orf28 | 12 | 12 | -1 | 1 | 15 | 12 | 10 | 0.46 | 85306302 | 70297424 | tier1 | 5UTR-CDS | 16281 | non-validated | 0 |
| SARC | TCGA-DX-A1KX-01A | TCGA-DX-A1KX | SLC6A8|PREP | SLC6A8 | PREP | X | 6 | 1 | -1 | 2 | 6 | 4 | 1.4 | 152954291 | 105845802 | tier2 | Out-of-frame | 16283 | NA | 0 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | SLC7A1|AKNA | SLC7A1 | AKNA | 13 | 9 | -1 | -1 | 11 | 5 | 5 | 0.045 | 30169553 | 117143726 | tier1 | 5UTR-5UTR | 16285 | NA | 0 |
| SARC | TCGA-HB-A43Z-01A | TCGA-HB-A43Z | SLC8A1|SRSF7 | SLC8A1 | SRSF7 | 2 | 2 | -1 | -1 | 8 | 5 | 5 | 1.9 | 40655613 | 38977336 | tier1 | Out-of-frame | 16296 | non-validated | 0 |
|
Showing page 267 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.