Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | RAB3B|MYSM1 | RAB3B | MYSM1 | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 0.29 | 52398990 | 59131303 | tier1 | Out-of-frame | 14079 | NA | 0 |
| SARC | TCGA-DX-A23U-01A | TCGA-DX-A23U | RAB3B|PKN2 | RAB3B | PKN2 | 1 | 1 | -1 | 1 | 25 | 19 | 19 | 0.81 | 52442562 | 89206671 | tier1 | In-frame | 14080 | NA | 0 |
| SARC | TCGA-DX-A6BF-01A | TCGA-DX-A6BF | RAB3IP|BEST3 | RAB3IP | BEST3 | 12 | 12 | 1 | -1 | 4 | 9 | 9 | 1.2 | 70150443 | 70078388 | tier1 | Out-of-frame | 14093 | NA | 0 |
| SARC | TCGA-3R-A8YX-01A | TCGA-3R-A8YX | RAB3IP|FRS2 | RAB3IP | FRS2 | 12 | 12 | 1 | 1 | 64 | 56 | 49 | 2.4 | 70132811 | 69955960 | tier1 | 5UTR-5UTR | 14098 | NA | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | RAB3IP|KCNC2 | RAB3IP | KCNC2 | 12 | 12 | 1 | -1 | 10 | 3 | 3 | 1.9 | 70150443 | 75445097 | tier1 | In-frame | 14101 | validated | 0 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | RAGE|MUCL1 | RAGE | MUCL1 | 14 | 12 | -1 | 1 | 155 | 115 | 85 | 0.11 | 102771299 | 55248900 | tier1 | In-frame | 14194 | non-validated | 0 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | RALY|ATRN | RALY | ATRN | 20 | 20 | 1 | 1 | 8 | 7 | 5 | 0.046 | 32619410 | 3515900 | tier2 | 5UTR-CDS | 14238 | NA | 0 |
| SARC | TCGA-DX-A3UF-01A | TCGA-DX-A3UF | RB1|CLEC2B | RB1 | CLEC2B | 13 | 12 | 1 | -1 | 30 | 19 | 18 | 1 | 48881542 | 10015172 | tier1 | CDS-5UTR | 14399 | NA | 0 |
| SARC | TCGA-3B-A9HR-01A | TCGA-3B-A9HR | RBM4B|FADD | RBM4B | FADD | 11 | 11 | -1 | 1 | 22 | 9 | 9 | 0.53 | 66444139 | 70052239 | tier1 | In-frame | 14482 | NA | 0 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | RBMS1|SLC20A1 | RBMS1 | SLC20A1 | 2 | 2 | -1 | 1 | 31 | 8 | 6 | 0.15 | 161349800 | 113420441 | tier1 | In-frame | 14492 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | RBPJ|SEL1L3 | RBPJ | SEL1L3 | 4 | 4 | 1 | -1 | 3 | 6 | 6 | 0.26 | 26322670 | 25835191 | tier1 | In-frame | 14494 | NA | 0 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | REPS2|GLRA2 | REPS2 | GLRA2 | X | X | 1 | 1 | 6 | 10 | 10 | 0.26 | 17121902 | 14708832 | tier1 | In-frame | 14545 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | REV3L|TMEM117 | REV3L | TMEM117 | 6 | 12 | -1 | 1 | 7 | 5 | 4 | 0.007 | 111643772 | 44238427 | tier1 | CDS-5UTR | 14581 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | RFWD2|GRM1 | RFWD2 | GRM1 | 1 | 6 | -1 | 1 | 20 | 16 | 16 | 0.75 | 176153769 | 146673386 | tier1 | Out-of-frame | 14599 | NA | 0 |
| SARC | TCGA-DX-A6YQ-01A | TCGA-DX-A6YQ | RGS17|PDLIM5 | RGS17 | PDLIM5 | 6 | 4 | -1 | 1 | 28 | 16 | 13 | 0.35 | 153365035 | 95583573 | tier1 | Out-of-frame | 14637 | NA | 0 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | ROBO2|TNNT2 | ROBO2 | TNNT2 | 3 | 1 | 1 | -1 | 4 | 1 | 1 | 0.12 | 77089997 | 201328791 | tier2 | Out-of-frame | 14873 | validated | 0 |
| SARC | TCGA-QQ-A5V9-01A | TCGA-QQ-A5V9 | ROCK1|C20orf103 | ROCK1 | C20orf103 | 18 | 20 | -1 | 1 | 23 | 38 | 36 | 5.9 | 18619433 | 9510289 | tier1 | In-frame | 14879 | NA | 0 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | RP11-362K2.2|CPM | RP11-362K2.2 | CPM | 12 | 12 | 1 | -1 | 6 | 19 | 19 | 0.34 | 58937962 | 69279669 | tier2 | 5UTR-CDS | 14927 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | RP11-574F21.3|CD1C | RP11-574F21.3 | CD1C | 1 | 1 | -1 | 1 | 10 | 7 | 6 | 0.019 | 160206925 | 158260924 | tier1 | Out-of-frame | 14942 | non-validated | 0 |
| SARC | TCGA-DX-A8BP-01A | TCGA-DX-A8BP | RPL8|SLC1A3 | RPL8 | SLC1A3 | 8 | 5 | -1 | 1 | 2 | 1 | 1 | 0.53 | 146015155 | 36606541 | tier3 | NA | 15007 | NA | 0 |
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