Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-A632-01A | TCGA-HC-A632 | SLC22A23|CAMTA1 | SLC22A23 | CAMTA1 | 6 | 1 | -1 | 1 | 54 | 50 | 42 | 0.037 | 3410422 | 6880241 | tier1 | Out-of-frame | 16066 | NA | 0 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | SLC22A23|NRSN1 | SLC22A23 | NRSN1 | 6 | 6 | -1 | 1 | 3 | 4 | 2 | 0.046 | 3410422 | 24134547 | tier1 | CDS-5UTR | 16071 | NA | 0 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | SLC25A40|ADAM22 | SLC25A40 | ADAM22 | 7 | 7 | -1 | 1 | 4 | 4 | 4 | 0.11 | 87476264 | 87822431 | tier1 | Out-of-frame | 16114 | NA | 0 |
| PRAD | TCGA-CH-5765-01A | TCGA-CH-5765 | SLC30A4|PDE2A | SLC30A4 | PDE2A | 15 | 11 | -1 | -1 | 6 | 4 | 4 | 1.1 | 45803336 | 72342183 | tier1 | NA | 16142 | NA | 0 |
| PRAD | TCGA-KC-A7F5-01A | TCGA-KC-A7F5 | SLC39A11|OPN3 | SLC39A11 | OPN3 | 17 | 1 | -1 | -1 | 3 | 2 | 1 | 0.9 | 71027695 | 241761299 | tier3 | In-frame | 16193 | NA | 0 |
| PRAD | TCGA-J4-8198-01A | TCGA-J4-8198 | SLC40A1|TYK2 | SLC40A1 | TYK2 | 2 | 19 | -1 | -1 | 2 | 6 | 6 | 6.5 | 190425318 | 10491352 | tier4 | 3UTR-5UTR | 16220 | NA | 0 |
| PRAD | TCGA-G9-7521-01A | TCGA-G9-7521 | SLC41A2|ANAPC7 | SLC41A2 | ANAPC7 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.14 | 105280071 | 110825697 | tier2 | In-frame | 16222 | NA | 0 |
| PRAD | TCGA-V1-A8MM-01A | TCGA-V1-A8MM | SLC41A3|ALDH1L1 | SLC41A3 | ALDH1L1 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.078 | 125786790 | 125879845 | tier1 | Out-of-frame | 16225 | NA | 0 |
| PRAD | TCGA-KC-A7F5-01A | TCGA-KC-A7F5 | SLC44A4|OGT | SLC44A4 | OGT | 6 | X | -1 | 1 | 2 | 15 | 9 | 1.8 | 31830969 | 70782980 | tier4 | 3UTR-CDS | 16233 | NA | 0 |
| PRAD | TCGA-ZG-A9L4-01A | TCGA-ZG-A9L4 | SLC45A2|CCDC125 | SLC45A2 | CCDC125 | 5 | 5 | -1 | -1 | 10 | 10 | 10 | 0.41 | 33982341 | 68581294 | tier1 | In-frame | 16236 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | SLC4A4|ARHGAP6 | SLC4A4 | ARHGAP6 | 4 | X | 1 | -1 | 13 | 14 | 13 | 0.11 | 72263370 | 11272827 | tier1 | In-frame | 16271 | NA | 0 |
| PRAD | TCGA-KK-A7AZ-01A | TCGA-KK-A7AZ | SLC4A4|C1orf135 | SLC4A4 | C1orf135 | 4 | 1 | 1 | -1 | 8 | 5 | 5 | 0.047 | 72263370 | 26162337 | tier1 | Out-of-frame | 16272 | NA | 0 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | SLC4A4|GOLGA4 | SLC4A4 | GOLGA4 | 4 | 3 | 1 | 1 | 6 | 6 | 6 | 0.17 | 72413437 | 37396592 | tier1 | In-frame | 16274 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | SLC7A1|HRSP12 | SLC7A1 | HRSP12 | 13 | 8 | -1 | -1 | 9 | 20 | 19 | 0.27 | 30104675 | 99120979 | tier4 | In-frame | 16287 | NA | 0 |
| PRAD | TCGA-EJ-7318-01B | TCGA-EJ-7318 | SLC9A3R1|FBXO18 | SLC9A3R1 | FBXO18 | 17 | 10 | 1 | 1 | 22 | 15 | 15 | 0.075 | 72745426 | 5978419 | tier1 | Out-of-frame | 16298 | NA | 0 |
| PRAD | TCGA-J4-A67L-01A | TCGA-J4-A67L | SMAD4|SKAP1 | SMAD4 | SKAP1 | 18 | 17 | 1 | -1 | 5 | 3 | 3 | 0.49 | 48593557 | 46474147 | tier1 | Out-of-frame | 16348 | NA | 0 |
| PRAD | TCGA-CH-5737-01A | TCGA-CH-5737 | SMAP1|CGA | SMAP1 | CGA | 6 | 6 | 1 | -1 | 2 | 8 | 8 | 0.29 | 71483128 | 87797925 | tier2 | CDS-5UTR | 16359 | NA | 0 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | SMARCA4|SLC44A2 | SMARCA4 | SLC44A2 | 19 | 19 | 1 | 1 | 2 | 2 | 2 | 0.017 | 11114073 | 10736929 | tier3 | Out-of-frame | 16380 | NA | 0 |
| PRAD | TCGA-EJ-8472-01A | TCGA-EJ-8472 | SORL1|GLT8D1 | SORL1 | GLT8D1 | 11 | 3 | 1 | -1 | 2 | 3 | 3 | 0.9 | 121483541 | 52731950 | tier2 | In-frame | 16600 | NA | 0 |
| PRAD | TCGA-ZG-A9MC-01A | TCGA-ZG-A9MC | SP3|SLC8A1 | SP3 | SLC8A1 | 2 | 2 | -1 | -1 | 15 | 16 | 15 | 0.033 | 174819601 | 40342769 | tier1 | In-frame | 16642 | NA | 0 |
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