Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-GC-A4ZW-01A | TCGA-GC-A4ZW | ERBB2IP|MYOM2 | ERBB2IP | MYOM2 | 5 | 8 | 1 | 1 | 3 | 2 | 2 | 5.4 | 65222634 | 2005466 | tier1 | 5UTR-CDS | 5735 | NA | 0.37974 |
| BLCA | TCGA-ZF-A9RL-01A | TCGA-ZF-A9RL | FAM164A|ANGPT1 | FAM164A | ANGPT1 | 8 | 8 | 1 | -1 | 4 | 5 | 5 | 0.057 | 79610748 | 108276579 | tier1 | In-frame | 6076 | NA | 0.37078 |
| BLCA | TCGA-2F-A9KO-01A | TCGA-2F-A9KO | FAM179B|KCNK13 | FAM179B | KCNK13 | 14 | 14 | 1 | 1 | 4 | 9 | 9 | 0.57 | 45523752 | 90650455 | tier1 | Out-of-frame | 6110 | NA | 0.34329 |
| BLCA | TCGA-FD-A43P-01A | TCGA-FD-A43P | FAM189A1|GABRG3 | FAM189A1 | GABRG3 | 15 | 15 | -1 | 1 | 11 | 10 | 9 | 0.096 | 29544572 | 27571956 | tier1 | In-frame | 6117 | NA | 0.33713 |
| BLCA | TCGA-XF-A9SK-01A | TCGA-XF-A9SK | FAM38A|PMFBP1 | FAM38A | PMFBP1 | 16 | 16 | -1 | -1 | 4 | 5 | 5 | 0.32 | 88851309 | 72153988 | tier1 | Out-of-frame | 6172 | NA | 0.33566 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | FAM73B|NUP188 | FAM73B | NUP188 | 9 | 9 | 1 | 1 | 5 | 4 | 1 | 0.22 | 131831408 | 131755476 | tier4 | In-frame | 6204 | NA | 0.34208 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | FAM91A1|ANXA13 | FAM91A1 | ANXA13 | 8 | 8 | 1 | -1 | 4 | 7 | 7 | 0.089 | 124787538 | 124724993 | tier1 | In-frame | 6218 | NA | 0.35011 |
| BLCA | TCGA-DK-AA6S-01A | TCGA-DK-AA6S | FANCI|ABHD2 | FANCI | ABHD2 | 15 | 15 | 1 | 1 | 6 | 4 | 3 | 0.42 | 89822005 | 89719043 | tier1 | In-frame | 6234 | NA | 0.35174 |
| BLCA | TCGA-ZF-AA58-01A | TCGA-ZF-AA58 | FBXO17|OSBPL6 | FBXO17 | OSBPL6 | 19 | 2 | -1 | 1 | 34 | 32 | 28 | 0.56 | 39466226 | 179259040 | tier1 | 5UTR-CDS | 6339 | NA | 0.35765 |
| BLCA | TCGA-BT-A42C-01A | TCGA-BT-A42C | FCHSD2|PPFIA1 | FCHSD2 | PPFIA1 | 11 | 11 | -1 | 1 | 10 | 5 | 5 | 0.84 | 72851076 | 70194295 | tier1 | In-frame | 6403 | NA | 0.37238 |
| BLCA | TCGA-BT-A2LA-01A | TCGA-BT-A2LA | FECH|C1orf130 | FECH | C1orf130 | 18 | 1 | -1 | 1 | 3 | 6 | 5 | 1.9 | 55247305 | 24921915 | tier1 | CDS-5UTR | 6417 | non-validated | 0 |
| BLCA | TCGA-CF-A3MF-01A | TCGA-CF-A3MF | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 507 | 142 | 129 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6490 | non-validated | 0.38077 |
| BLCA | TCGA-CF-A3MG-01A | TCGA-CF-A3MG | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 918 | 1808 | 1520 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6491 | NA | 0.38077 |
| BLCA | TCGA-CF-A3MH-01A | TCGA-CF-A3MH | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1831 | 3686 | 2998 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6492 | NA | 0.38077 |
| BLCA | TCGA-CF-A47S-01A | TCGA-CF-A47S | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4470 | 4735 | 3751 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6493 | NA | 0.38077 |
| BLCA | TCGA-CF-A47T-01A | TCGA-CF-A47T | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 5 | 5 | 4 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6494 | NA | 0.38077 |
| BLCA | TCGA-CF-A8HY-01A | TCGA-CF-A8HY | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 572 | 477 | 431 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6495 | NA | 0.38077 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2072 | 1560 | 1418 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6501 | NA | 0.38077 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 666 | 620 | 589 | 0.12 | 1795770 | 1746245 | tier1 | Out-of-frame | 6509 | NA | 0.38077 |
| BLCA | TCGA-XF-AAMZ-01A | TCGA-XF-AAMZ | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 474 | 393 | 365 | 0.12 | 1808661 | 1741429 | tier4 | In-frame | 6510 | NA | 0.38077 |
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